View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_34 (Length: 468)
Name: NF19530_low_34
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_34 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 10868737 - 10868664
Alignment:
| Q |
35 |
tacatcactgctctttcatggcaccatgtaatgtgaccattgaaaattgaaacttaacagtaagaaagtgtcca |
108 |
Q |
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| T |
10868737 |
tacattaccgctctttcacggcaccatgtaatgtgagcatagaaaattgaaacttaacagtaagaaagtgtcca |
10868664 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 10885648 - 10885721
Alignment:
| Q |
35 |
tacatcactgctctttcatggcaccatgtaatgtgaccattgaaaattgaaacttaacagtaagaaagtgtcca |
108 |
Q |
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| T |
10885648 |
tacattactgctttttcatggcaccatgtaattcgagcatacaaaattgaaacttaagagtaagaaagtgtcca |
10885721 |
T |
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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 31607255 - 31607214
Alignment:
| Q |
62 |
gtaatgtgaccattgaaaattgaaacttaacagtaagaaagt |
103 |
Q |
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| T |
31607255 |
gtaatgtgaccatagaaaattgaaacttaacagtaagaaagt |
31607214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10868475 - 10868405
Alignment:
| Q |
148 |
gaattcaccatacaaaagagacaattgcatcttccacacaaaaagtgcaccacaaaacataattcaccaatg |
219 |
Q |
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| T |
10868475 |
gaattcaccatacaaaagagactatcacatcttccgcacaaaaagctc-ccacaaaacagaattcaccaatg |
10868405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 10885892 - 10885960
Alignment:
| Q |
148 |
gaattcaccatacaaaagagacaattgcatcttccacacaaaaagtgcaccacaaaacataattcacca |
216 |
Q |
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| T |
10885892 |
gaattcaccatacaaaagagactatcacgtcttccacacaaaaagctcaccgcaaaactgaattcacca |
10885960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 5976 - 5927
Alignment:
| Q |
141 |
ctaaactgaattcaccatacaaaagagacaattgcatcttccacacaaaa |
190 |
Q |
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| T |
5976 |
ctaaattgaattcaccacacaaaagagactattgcatcttccccacaaaa |
5927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 19430 - 19381
Alignment:
| Q |
141 |
ctaaactgaattcaccatacaaaagagacaattgcatcttccacacaaaa |
190 |
Q |
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| T |
19430 |
ctaaattgaattcaccacacaaaagagactattgcatcttccccacaaaa |
19381 |
T |
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