View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_37 (Length: 462)
Name: NF19530_low_37
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 38955026 - 38954589
Alignment:
| Q |
17 |
atcatatgtgtaaaatagttgtacactaatatctaataagatatatatcaactttttctatgtcatacaccactaattttaaagtaccttaacaaaagta |
116 |
Q |
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| T |
38955026 |
atcatatctgtaaaatggttgtacactaacatctaataggatatatatcaactttttctatgtcatacaccactaattttaaagtaccttaacaaaagta |
38954927 |
T |
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| Q |
117 |
tgatgggacaaaatggtagttttcataggatgtaaatgtaaaactttattacgttgacaatatatatcccttaaatccttaagagtatttagttatatat |
216 |
Q |
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| T |
38954926 |
tgatgtgacaaaatggtagttttcatcggatgtaaatgtaaaactttattacgttgacaatatatatcccttaaatccttaacaatatttagttatatat |
38954827 |
T |
|
| Q |
217 |
atgtaaatgtgtaaaataagattaagctaaggttatataacaataatttgtacgattaatagaaacaataatta---ttatgtacttaccaaacaaaggc |
313 |
Q |
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| T |
38954826 |
atgtaaatgtgtaaaataagattaagctaaggttatataactataatttgtacgattaatagaaacaataattattattatgtacttaccaaacaaaggc |
38954727 |
T |
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| Q |
314 |
ctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgttgctc |
413 |
Q |
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| T |
38954726 |
ctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgttgctc |
38954627 |
T |
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| Q |
414 |
ttgaaggagtccactcaaaaatacatcattcttctcac |
451 |
Q |
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| T |
38954626 |
ttgaaggagtccactcaaaaatacatcattcttttcac |
38954589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 38975724 - 38975846
Alignment:
| Q |
309 |
aaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgt |
408 |
Q |
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|||||||||||||||| ||| || |||||||| || ||||||||||| | ||||||||||||||||||| ||||||||| | | || ||||| ||| |
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| T |
38975724 |
aaggcctttgatgatttgatcagtatagtactcaggttgtgattcttgtaaacttagaagatgatctatcatagtatttgtatgctggtttttgctgcgt |
38975823 |
T |
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| Q |
409 |
tgctcttgaaggagtccactcaa |
431 |
Q |
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| T |
38975824 |
tgttcttgaatgagtcctctcaa |
38975846 |
T |
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Back To:
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