View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_38 (Length: 461)
Name: NF19530_low_38
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33268288 - 33268504
Alignment:
| Q |
1 |
tgagaaattaaatatctaacattcttctttgctgtannnnnnnctctcctttgcactttcctcctccttgtgattttcatttgcagcacatatagaagat |
100 |
Q |
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| T |
33268288 |
tgagaaattaaatatctaagattcttctttgctgtatttttttctctcctttgcactttcctcctccttgtgattttcatttgcagcacatatagaagat |
33268387 |
T |
|
| Q |
101 |
gagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacctgatgga |
200 |
Q |
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| T |
33268388 |
gagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacctgatgga |
33268487 |
T |
|
| Q |
201 |
ttgatgcctaggtacac |
217 |
Q |
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||||||||||||||||| |
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| T |
33268488 |
ttgatgcctaggtacac |
33268504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 285 - 445
Target Start/End: Original strand, 33268572 - 33268734
Alignment:
| Q |
285 |
acttaatatgaaattggtttgacannnnnnn--gtcttctgctgtaagaaagctcaatttgttgactttgaatataagaaagcttaatttagttgatttt |
382 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268572 |
acttaatatgaaattggtttgacattttttattgtcttctgctgtaagaaagctcaatttgttgactttgaatataagaaagcttaatttagttgatttt |
33268671 |
T |
|
| Q |
383 |
tcaagttaattgtcttgtttagttagatggaatcctaaaattttatatatttcctaatagttc |
445 |
Q |
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|
| T |
33268672 |
tcaagttaattgtcttgtttagttagatgcaatcctaaaattttatatatttcctaatagttc |
33268734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 10034576 - 10034470
Alignment:
| Q |
94 |
agaagatgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacc |
193 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
10034576 |
agaaaatgagagagataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacc |
10034477 |
T |
|
| Q |
194 |
tgatgga |
200 |
Q |
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||||||| |
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|
| T |
10034476 |
tgatgga |
10034470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 35670764 - 35670650
Alignment:
| Q |
99 |
atgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacctgatg |
198 |
Q |
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|||||||| || || |||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||| ||||| || ||||| ||||| ||||| | |
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| T |
35670764 |
atgagagaaattatcagtattcacatcggtcaagccggaatccaagtcggtaattcttgctgggagctttactgtctcgaacatggcattcagcctgacg |
35670665 |
T |
|
| Q |
199 |
gattgatgcctaggt |
213 |
Q |
| |
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| |||||||||||| |
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|
| T |
35670664 |
gcatgatgcctaggt |
35670650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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