View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_39 (Length: 460)
Name: NF19530_low_39
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_39 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 5283957 - 5283498
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5283957 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaagt |
5283858 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283857 |
tctaaatagtatgaagatcattaagttacaatcatgggaaaaaaaatttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
5283758 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283757 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcac |
5283658 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5283657 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaggt |
5283558 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283557 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
5283498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 5291452 - 5290993
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5291452 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaactgtcagtcacagtttatgattgcacaggacgaacgtcttcgatcaacttcggaggt |
5291353 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || ||||||||| | |||| | |||| |||||||||||||||||| ||| ||| |
|
|
| T |
5291352 |
tctaaatagtatgaagatcattaagttacagtcatgggaagaaaaattcaagaacttagttgagttgttacgcgataaagagtttgtatggttgtcgaag |
5291253 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||||| |||| |||||| |
|
|
| T |
5291252 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
5291153 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||| || ||||| |||||| |||||||||| |
|
|
| T |
5291152 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagt |
5291053 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
460 |
Q |
| |
|
|| |||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5291052 |
taaggtttcgttcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatga |
5290993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 15124895 - 15125339
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| | |
|
|
| T |
15124895 |
tatgtggacttttcaatataccatttgcaaggatcctacaaaattgtcagtcacagtttatgattgcacaggacgaacgtcttcgaacaacttcagagat |
15124994 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| || |||||||||||||||||| ||| |||| |
|
|
| T |
15124995 |
tctaaatagtatgaagatcattaagttacaatcatgggaagaaaaattcaagaacttagtcgagtcgctgcgcgataaagagtttgtatggttgtctaag |
15125094 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||| | | | || || ||||||||||||| |||| |||| | ||||||||| |
|
|
| T |
15125095 |
gcacagatcctgaaagcttctggttcatttctttattggatatctcctgcaatggtttctgctgttgttttccttgcatgttctgtcactaaaagtgcac |
15125194 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||||| |||| ||||||||||| |
|
|
| T |
15125195 |
cattgaatgctgaaaccattttcacagttcttgcaacattaaggaacatgggagaacctgttagaactatcccagaggctctatccaatatgattcaagc |
15125294 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaaga |
445 |
Q |
| |
|
|| ||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
15125295 |
taaggtttcattcgatcgtcttaataacttttttcttgatgaaga |
15125339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 14950771 - 14950312
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
|||||||||| ||||| |||||||| | |||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| ||| | |
|
|
| T |
14950771 |
tatgtggacttctcaacgtaccattaggaagggtcctacaaaattgtcggtcacagtttatgattgcacaggatgaacgtcttcgatcaacttcagagat |
14950672 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || ||||||||| | ||||||||||| |||||||||| ||||| ||| |||| |
|
|
| T |
14950671 |
tctaaatagtatgaagatcatcaagttacaatcatgggaagaaaaattcaagaacttagtggagtcgctacgcaataaagagttcatatggttgtctaag |
14950572 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
|||| ||||||| | ||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14950571 |
acacaaatcctgaaatcttatagttcatttcttttttggatgtctcctacagttatatctgctgttgttttccttggatgtgctgttaccaagagtgcac |
14950472 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||| | || |||| |||||||| |||| |||||||||||| |
|
|
| T |
14950471 |
cattgaatgctgaaaccattttcacagttcttgcaacattggggaacatgggagagcctattataatgttccctgaggctctatccactatgattcaagt |
14950372 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
460 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||||||| |||||| ||||||||||||| |
|
|
| T |
14950371 |
taaggtttcgtttgatcgtcttaaaagctttttgcttgctgaagaactaaacaatgatga |
14950312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 5305646 - 5306102
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||| | |
|
|
| T |
5305646 |
tatgtggacttctcaatgtaccgtcagcaaggatcctacaaaattgccagtcacagtttatgattgcacaagacgaacgtcttcgatcaacttcagagat |
5305745 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||||||| || ||||||||||| |||| | ||||| ||||||||||||||||| ||| ||| |
|
|
| T |
5305746 |
tctgaatagtatgaagattattaagttacagtcatgggaagaaaaattcaagaacttaattgagttgttacgtcataaagagtttgtatggttgtcaaag |
5305845 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
||||||||||| | ||||| | | ||||||||||||||| |||||||||| ||||| || | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
5305846 |
gcacagatccttaaagcttttggatcatttctttattggctgtctcctacagttatttctg---ttgttttccttggatgtgctgtttccaagagtgcac |
5305942 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| | ||||||||||||||| |||||| ||| ||||||| |||||||| |||||| |||||||||| |
|
|
| T |
5305943 |
cattgaatgctgaaatcattttcacaattcttgtagcattgaggaacatggcagaacctgttaggatgatccctgaggctctatccattctgattcaagt |
5306042 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
460 |
Q |
| |
|
|| |||||||| |||||||| |||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
5306043 |
taaggtttcgttcgatcgtctcaataaccttctgcttgatgaagaactaaacaatgatga |
5306102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 3 - 446
Target Start/End: Original strand, 5312858 - 5313301
Alignment:
| Q |
3 |
tgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggttc |
102 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||| |||||||||| ||| ||| |
|
|
| T |
5312858 |
tgtggacttctcaatgtaccacttgcaaggatcctacaaaattgtcaggtacagtttatgattgcacaggatgaacggcttagatcaacttcagagattc |
5312957 |
T |
|
| Q |
103 |
taaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataaggc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || || || || |||||||| ||| |
|
|
| T |
5312958 |
taaatagtatgaagatcattaagttacaatcatgggaagaaaaattaaagaacttaatcgagtccctacgagaaaaggaattcaaatggctgtcaaagat |
5313057 |
T |
|
| Q |
203 |
acagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaaca |
302 |
Q |
| |
|
|||| |||||| ||||| | |||||||||||||| |||||||||| ||||| | || ||||| ||||||||||| ||| ||| |||||| || |
|
|
| T |
5313058 |
acagttcctgaaagctttcggaacatttctttattggctgtctcctacagttattcctgctgttgtcttccttggatgcatatttttcaatagtgcacca |
5313157 |
T |
|
| Q |
303 |
ttgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagtga |
402 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||||||||||||||||||||| || || |||||||||||||||| || || | ||||||||| | |
|
|
| T |
5313158 |
ttgaatgccgataccatttttacagttcttgcaacattgaggaacatgggagatcctgttcttatgatcccagaggctctatctataacgattcaagtta |
5313257 |
T |
|
| Q |
403 |
aagtttcgtttgatcgtcttaataactttttgcttgatgaagag |
446 |
Q |
| |
|
| ||||| ||||||||||| || | ||| |||||||||||||| |
|
|
| T |
5313258 |
aggtttcctttgatcgtctcaacacatttatgcttgatgaagag |
5313301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 367 - 460
Target Start/End: Original strand, 11832544 - 11832637
Alignment:
| Q |
367 |
tgatcccagaggctctttccattatgattcaagtgaaagtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatga |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
11832544 |
tgatcccagaggctctttccattatgattcaagttaaagttttgttcgatcgtcttaataactttttgcttgatgaagaaatatacaatgatga |
11832637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 31527454 - 31527010
Alignment:
| Q |
1 |
tatgtggactcctcaatgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggt |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| | |
|
|
| T |
31527454 |
tatgtggacttctcaacgtaccatttgcaaggatcctacaaaattgtcagtcacagtttatgattgcacaggacgaacgtcttagatcaacttccgagat |
31527355 |
T |
|
| Q |
101 |
tctaaatagtatgaagatcattaagttacaatcatgggnnnnnnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
31527354 |
tctaaatagtatgaagatcattaagttacaatcatgggaagaaaaatttaagaacttagttgagtccttacgcgataaagagtttgtatggttgtctaag |
31527255 |
T |
|
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||| || ||| |
|
|
| T |
31527254 |
tcgcagatcctgaaagcttctagttcatttcttttttggatgtctcctacaattatatcatctgttgttttccttggatgtgctatttccaatagcgcac |
31527155 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattcaagt |
400 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| | ||||||||| || ||||| |||| ||||| ||||| || ||| |||||||||| |
|
|
| T |
31527154 |
cattgaatgctcaaaccattttcacagttcttgcaacattgaaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagt |
31527055 |
T |
|
| Q |
401 |
gaaagtttcgtttgatcgtcttaataactttttgcttgatgaaga |
445 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527054 |
taaggtttcctttgatcgtcttaataactttttgcttgatgaaga |
31527010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 43 - 389
Target Start/End: Complemental strand, 11806670 - 11806334
Alignment:
| Q |
43 |
attgtcagtcacagtttatgatttcacaggacgaacgtcttcgatcaacttcggaggttctaaatagtatgaagatcattaagttacaatcatgggnnnn |
142 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | |||| ||| || |||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
11806670 |
attgtcagtcacagtttatgattgcacaggacgaac----------accttcagagattgtaaataatatgaagatcattaagttacagtcatgggaaga |
11806581 |
T |
|
| Q |
143 |
nnnntttaagaacttaatcgagtcgctacgtgataaagagtttgtatggctgtataaggcacagatcctgagagcttctagttcatttctttattggatg |
242 |
Q |
| |
|
|| ||||||||| | ||| | |||| |||||||||||||||||| ||| ||||||||||||||||| |||| ||| ||||||||| ||||||||| |
|
|
| T |
11806580 |
aaaattcaagaacttagttgagctgttacgcgataaagagtttgtatggttgtctaaggcacagatcctgaaagctgctaattcatttctctattggatg |
11806481 |
T |
|
| Q |
243 |
tctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaacattgaatgctgaaaccgttttcacagttcttgcaacattga |
342 |
Q |
| |
|
||||||| |||||| | || ||||||| ||||||||| |||| |||| | |||| |||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11806480 |
tctcctatggttatacctgcttttgtttttgttggatgtgttgttaccaagaatgcaccattaaatgctgaaaccattttcacagttcttgcaacattga |
11806381 |
T |
|
| Q |
343 |
ggaacatgggagaaccatttaaattgatcccagaggctctttccatt |
389 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| |||||||| |||||| |
|
|
| T |
11806380 |
ggaacatgggagaacctgttagaatgatccctgaggctctatccatt |
11806334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 39523012 - 39523096
Alignment:
| Q |
313 |
aaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattca |
397 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| ||||| || |||||||||||||| |
|
|
| T |
39523012 |
aaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatccctgaggcactatccattatgattca |
39523096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 39522631 - 39522692
Alignment:
| Q |
18 |
gtaccatttgcaaggatcctacaaaa-ttgtcagtcacagtttatgatttcacaggacgaac |
78 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
39522631 |
gtaccattttcaaggatcaaacaaaaattgtcagtcacaatttatgattgcacaggacgaac |
39522692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 397
Target Start/End: Complemental strand, 6076391 - 6076195
Alignment:
| Q |
201 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcaa |
300 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| ||||||| ||||||||| |||||| | || ||||||| || |||||| |||| || | | |
|
|
| T |
6076391 |
gcacagatcctgaaagctactaattcatttctctattggaagtctcctacggttatacctgcttttgtttttgtttgatgtgttgttacctacaccatcc |
6076292 |
T |
|
| Q |
301 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattca |
397 |
Q |
| |
|
||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||| ||| | |||| | ||||| || |||||||||||||| |
|
|
| T |
6076291 |
tattaaatgctgaaaccattttcacagtccttgcaacattgaggagcatgggagaacctgttagaatgattactgaggcactatccattatgattca |
6076195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6076663 - 6076593
Alignment:
| Q |
15 |
aatgtaccatttgcaaggatcctacaaaa-ttgtcagtcacagtttatgatttcacaggacgaacgtcttc |
84 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6076663 |
aatgtaccattttcaaggatcaaacaaaaattgtcagtcacagtttatgattggacaggacgaacgccttc |
6076593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 33002235 - 33002144
Alignment:
| Q |
306 |
aatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattca |
397 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || || |||||||||||| ||| | ||||||| ||||| || |||||||||||||| |
|
|
| T |
33002235 |
aatgctgaaaccattttcacagttcttgcaacatcgaagagcatgggagaacctgttagaatgatccctgaggcactatccattatgattca |
33002144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 33002608 - 33002541
Alignment:
| Q |
18 |
gtaccatttgcaaggatcctacaaaa-ttgtcagtcacagtttatgatttcacaggacgaacgtcttc |
84 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
33002608 |
gtaccattttcaaggatcaaacaaaaattgtcagtcacaatttatgattgcacaggacgaacgccttc |
33002541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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