View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_4 (Length: 882)
Name: NF19530_low_4
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 395 - 863
Target Start/End: Original strand, 41129884 - 41130352
Alignment:
| Q |
395 |
cataattagtaattaccataagcatggctaatattttccgtggtcttgaaggcaacacaaactacaatacatccaatcaagaacatgtagttgatctctg |
494 |
Q |
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| T |
41129884 |
cataattagtaattaccataagcatggctaatattttccgtggtcttgaaggcaacacaaactacaatacatccaatcaagaacatgtagttgatctctg |
41129983 |
T |
|
| Q |
495 |
gaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagggaaacaacctagactaagggcttgtgatataatggaaaatgctcc |
594 |
Q |
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| T |
41129984 |
gaatataaacttgaccttcatggttagctgaagtatgaacaaccttgactctagggaaacaacctaaactaagggcttgtgatataatggaaaatgctcc |
41130083 |
T |
|
| Q |
595 |
tgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgttggccaatacaagggatctgcatgttattcacatttataaataata |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41130084 |
tgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgttggccaatacaagggatctgcatgttattcacatttaataataata |
41130183 |
T |
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| Q |
695 |
atgtgcgtatgatttctcttaaatattaatcaactaattaataataattacctggtatactttcatagaaagtattccccactttgtcaggaaattgtct |
794 |
Q |
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| T |
41130184 |
atgtgggtatgatttctcttaaaaattaatcaactaattaataataattacctggtatactttcatagaaagtattccccactttgtcaggaaattgtct |
41130283 |
T |
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| Q |
795 |
tagaaatgctgcttgcccaatatatgctgtcaatattgcaggaaatgtaacaaaagaaaagctaatctg |
863 |
Q |
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| T |
41130284 |
tagatatgctgcttgcccaatatatgccgtcaatattgcaggaaatgtaacaaaagaaaagctaatctg |
41130352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 41129505 - 41129818
Alignment:
| Q |
18 |
tgtacatctgttctgtttgacaattccctcaaatactcggtagagactttgtttttgagttcaaacatgtatctttctttgtgaacgtaatgccaaattc |
117 |
Q |
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| T |
41129505 |
tgtacatctgttctgtttgccaattccctcaaatactcggtagagactttgtttttgagttcaaacatgtatctttctttgtgaacgtaatgccaaattc |
41129604 |
T |
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| Q |
118 |
ccataaccattgtcaagaacatagctagtacaattggaaaatatcctccttttgaaaacttggttatttgagatgagaaataaagaatctctatgaaacc |
217 |
Q |
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| T |
41129605 |
ccataaccattgtcaagaacatagctagtacaattggaaaatatcctccttttgaaaacttggttatttgagatgagaaataaagaatctctatgaaacc |
41129704 |
T |
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| Q |
218 |
aaatacaaaaaagaaaaggctaaccatccataaactctttttccatataacaagcattataagtgaaactagtgttgttgtgatcaacatatcaccaata |
317 |
Q |
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| T |
41129705 |
aaatacaaaaaagaaaaggctaaccatccataaactctttttccatataacaagcattataagtgaaactagtgttgttgtgatcaacatatcaccaata |
41129804 |
T |
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| Q |
318 |
acagcaatccctgc |
331 |
Q |
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| T |
41129805 |
acagcaatccctgc |
41129818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 485 - 660
Target Start/End: Complemental strand, 7801091 - 7800916
Alignment:
| Q |
485 |
ttgatctctggaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagggaaacaacctagactaagggcttgtgatataatgg |
584 |
Q |
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||||| || |||||||||||||| |||| ||| || | ||||| || |||||||| || || ||||||||||| | ||| | ||||| |||||||||| |
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| T |
7801091 |
ttgatttcaggaatataaacttggccttgatgtttggtagaagtgtgcacaaccttaacccttgggaaacaacccatacttaaagcttgagatataatgg |
7800992 |
T |
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| Q |
585 |
aaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgttggccaatacaa |
660 |
Q |
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| T |
7800991 |
aaaatgctgcggaaactattgcttggctagctatgatggaagcaacaaccgcaacaacaaatgttggccaatacaa |
7800916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 7801639 - 7801589
Alignment:
| Q |
47 |
caaatactcggtagagactttgtttttgagttcaaacatgtatctttcttt |
97 |
Q |
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| T |
7801639 |
caaatactcggaagagactttattcttgagttcaaacatgtacctttcttt |
7801589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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