View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_44 (Length: 452)
Name: NF19530_low_44
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 435
Target Start/End: Complemental strand, 54817870 - 54817457
Alignment:
| Q |
22 |
tctaacctcgatagcatcaacaatggcaaacaaagaaatggatattgcgagaggtgtggatttgaagcgttacatgggtcggtggtacgagatagcgtgt |
121 |
Q |
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| T |
54817870 |
tctaacctcgatagcatcaacaatggcaaacaaagaaatggatgttgcgagaggtgtggatttgaagcgttacatgggtcggtggtacgagatagcgtgt |
54817771 |
T |
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| Q |
122 |
tttccatcaaggtttcaaccaagtgatggtaagaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagacttggagtg |
221 |
Q |
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| T |
54817770 |
tttccatcaaggtttcaaccaagtgatggtaagaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagacttggagtg |
54817671 |
T |
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| Q |
222 |
gtggaaaaagaagttacattgaaggtactgcttataaagctgatcctaatagtgatcaggctaaacttaaggtcaaattctatgttcctccaatgcttcc |
321 |
Q |
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| T |
54817670 |
gtggaaaaagaagttacattgaaggtactgcttataaagctgatcctaatagtgatgaggctaaacttaaggtcaaattctatgttcctccaatgcttcc |
54817571 |
T |
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| Q |
322 |
tatcattcctgttactggggattattgggttttgcaccttgatcatgattatcattatgctcttattggacaacctagcaggaattatctttgggtatgt |
421 |
Q |
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| T |
54817570 |
tatcattcctgttactggggattattgggttttgcaccttgatcatgattatcattatgctcttattggacaacctagcaggaattatctttgggtatgt |
54817471 |
T |
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| Q |
422 |
gttttactttttca |
435 |
Q |
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| T |
54817470 |
gttttactttttca |
54817457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 390
Target Start/End: Complemental strand, 54820646 - 54820409
Alignment:
| Q |
153 |
agaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagacttggagtggtggaaaaagaagttacattgaaggtactgc |
252 |
Q |
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||||||||||||| || |||||||| | |||||| ||||| ||||||| ||||||||||||| | ||| ||||||| | || ||||| | ||| |
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| T |
54820646 |
agaacacaagagccacatacactctaaacagtgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgc |
54820547 |
T |
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| Q |
253 |
ttataaagctgatcctaatagtgatcaggctaaacttaaggtcaaattctatgttcctccaatgcttcctatcattcctgttactggggattattgggtt |
352 |
Q |
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|||||| ||||| || || |||||| | ||||| || |||||||||||||||||||||||| | | || || ||||||| | ||| ||||| ||| || |
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| T |
54820546 |
ttataaggctgaccccaaaagtgatgaagctaagctcaaggtcaaattctatgttcctccattcttgccaattattcctgctgttggagattactggatt |
54820447 |
T |
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| Q |
353 |
ttgcaccttgatcatgattatcattatgctcttattgg |
390 |
Q |
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| T |
54820446 |
ttgtaccttgatgaagattatcaatatgctctcattgg |
54820409 |
T |
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