View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_48 (Length: 438)
Name: NF19530_low_48
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 253 - 425
Target Start/End: Complemental strand, 35284362 - 35284190
Alignment:
| Q |
253 |
tattcatatattactcaattttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatattctattcgacatcgctca |
352 |
Q |
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| T |
35284362 |
tattcatatattactcaattttcaggccccaaacattggtgctataatggacaatacctatcaaataattcgggatggatattctattcgacattgctca |
35284263 |
T |
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| Q |
353 |
cgtaagtttctattcatatacttgttctattcctcttggttgcatgtagtttgtctttgtggcattatgtttg |
425 |
Q |
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| T |
35284262 |
cgtaagtttctattcatatacttgttctattcctcttggttgcatgtagtttatctttgtggcattatgtttg |
35284190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 35284522 - 35284363
Alignment:
| Q |
25 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgtgctgttttcttttactttctttcttaaacggcctct |
124 |
Q |
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| T |
35284522 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgcgctgttttcttttactttctttcttaaacggcctct |
35284423 |
T |
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| Q |
125 |
tatccgtattctatgacatgcatgtatatctctataggcaacagatgcaaggatcctccg |
184 |
Q |
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| T |
35284422 |
tatccgtattctatggcatgcatgtatatctctataggcaacagatgcaaggatcctccg |
35284363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 35242124 - 35241956
Alignment:
| Q |
181 |
tccggtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatattactcaatt |
272 |
Q |
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| T |
35242124 |
tccggtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttagtttcatatatagtgcaacgcagtcatatattactcaatt |
35242025 |
T |
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| Q |
273 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatattctattc |
341 |
Q |
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| T |
35242024 |
ttcaggccccaaacattggtgctataatggacaatacccctcaaatgattcgggatggatattctattc |
35241956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 367
Target Start/End: Complemental strand, 35247754 - 35247567
Alignment:
| Q |
188 |
agagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcat----agtgcaacctattcatatattactcaattttcaggc |
279 |
Q |
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| T |
35247754 |
agagtcaggttatatataatggctaaatgttcaatgttaatcaatggttcttggtttcattcatagcgcaacacactcatatattacttaattttcaggc |
35247655 |
T |
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| Q |
280 |
cccaaacattggtcctataatggacaatacctatcaaataattcgggatggatattctattcgacatcgctcacgtaagtttctattc |
367 |
Q |
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| T |
35247654 |
cccaaaagttggtgctacaatggacaatacccctcaaataattcgggataaatattctattcaacaccatgcaagtaagtttctattc |
35247567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 35272262 - 35272094
Alignment:
| Q |
185 |
gtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatatta----ctcaatt |
272 |
Q |
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|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||| | |||||||||| ||||||| |
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| T |
35272262 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttggtttcatatatagtgcaacacagtcatatattaattactcaatt |
35272163 |
T |
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| Q |
273 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatattctattc |
341 |
Q |
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||||||||| |||| |||||||||||||||| |||||| ||||||||||| |||||||||| |||||| |
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| T |
35272162 |
ttcaggcccaaaacgttggtcctataatggaaaatacccctcaaataattccggatggatatgctattc |
35272094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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