View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_50 (Length: 436)
Name: NF19530_low_50
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 14142104 - 14142508
Alignment:
| Q |
17 |
ataagcaaatattataagcaccatttgcatatcaaaataagcaacttgttctattgttcacaaaagattgacacataacacaatcgtgattcgcatatca |
116 |
Q |
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| T |
14142104 |
ataagcaaatattataagcaccatttgcatatcaaaataagcaacttgttctattgttcacaaaagattgacacataacacaatcgtgattcgcatatca |
14142203 |
T |
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| Q |
117 |
tagtacttttgtttccacaccgtccatcactttggtttgttcatcattatttttcagtggagacgtgaagcnnnnnnnttacactgcacatttattttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
14142204 |
tagtacttttgtttccacaccgtccatcactttggtttgttcatcattatttttcagtggagacgtaaagcaaaaaaattacactgcacatttattttaa |
14142303 |
T |
|
| Q |
217 |
gtccgttcattcttgccttcactcacgtccctaaattattttttgatttattattttacttgatgtcagaacaagagatttagcatatgtattagcttat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |
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| T |
14142304 |
gtccgttcattcttgccttcactcacgtccctaaattattttttgatttattattttacttgatgtc-gaacaagagatttagcatatgtatcagctgat |
14142402 |
T |
|
| Q |
317 |
agttcttaattgtgattctctttcgtaagataattaatacgagtgacataattttgtctatcagttgtaggttctttaactgctacagtagagcgttaaa |
416 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
14142403 |
agttcttaattgtgattctctttcgtaagctgattaatacgagtgacataattttgtctatcaattgtaggttctttaaccgctacagtagagcgttaaa |
14142502 |
T |
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| Q |
417 |
tatgat |
422 |
Q |
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| T |
14142503 |
tatgat |
14142508 |
T |
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