View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_52 (Length: 433)
Name: NF19530_low_52
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_52 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 29534927 - 29534513
Alignment:
| Q |
1 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29534927 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattaatgaaaacatagttatgcagtagtgttgcaagagtg |
29534828 |
T |
|
| Q |
101 |
caggttctgtcatggagtgctcttgctgatgtagnnnnnnnnn-cttccccagttcagcggtggtgtttgtaggccggctaaacatgacttttactggtg |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534827 |
caggttctgtcatggagtggtcttgctgatgtagttttttttttcttccccagttcagcggtggtgtttgtaggccggctaaacatgacttttactggtg |
29534728 |
T |
|
| Q |
200 |
ttaaatcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29534727 |
ttaaatcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaag |
29534628 |
T |
|
| Q |
300 |
ggcattatattgtgtgtattaaagtatcattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatg |
399 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29534627 |
ggcattatattgtgtgtactaaagtatgattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatg |
29534528 |
T |
|
| Q |
400 |
atagcaagtgcatat |
414 |
Q |
| |
|
||||||||||||||| |
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|
| T |
29534527 |
atagcaagtgcatat |
29534513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 54419858 - 54420273
Alignment:
| Q |
1 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54419858 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
54419957 |
T |
|
| Q |
101 |
caggttctgtcatggagtgctcttgctgatgtagnnnnnnnnn-cttccccagttcagcggtggtgtttgtaggccggctaaacatgacttttactggtg |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54419958 |
caggttctgtcatggagtggtcttgctgatgtagttttttttttcttccccggttcagcggtggtgtttgtaggccggctaaacatgacttttactggtg |
54420057 |
T |
|
| Q |
200 |
ttaaa-tcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaa |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54420058 |
ttaaaatcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaa |
54420157 |
T |
|
| Q |
299 |
gggcattatattgtgtgtattaaagtatcattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcat |
398 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
54420158 |
gggcattaaactgtgtgtattaaagtatgattaaattgtggtttgtttgtgatttattcagtttgtatgccttcacctctaatggtttacttttcttcat |
54420257 |
T |
|
| Q |
399 |
gatagcaagtgcatat |
414 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
54420258 |
gatagcaagtgcatat |
54420273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 1143368 - 1143443
Alignment:
| Q |
255 |
aaaatttgactgttttcatgagaggaaataatt----aaatatgagaagggcattatattgtgtgtattaaagtat |
326 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| | ||||||| |||||| |||| ||||||| ||||||||||| |
|
|
| T |
1143368 |
aaaatttgattgttttcatgagagggaataaatcaataaatatgggaagggtattaaattgtgtatattaaagtat |
1143443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 2840776 - 2841179
Alignment:
| Q |
14 |
acaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtgcaggttctgtcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840776 |
acaaagtctttcctattaggtcctatgagcataacaaggagaacgacattagtgaaaacacagttatgcagtagtgttgcaagagtgcaggttctgtcat |
2840875 |
T |
|
| Q |
114 |
ggagtgctcttgctgatgtagnnnnnnnnn--cttccccagttcagcggtggtgtttgtaggccggctaaacatgacttttactggtgttaaa-tcagtc |
210 |
Q |
| |
|
|||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2840876 |
ggagtggtcttgctgatgtagtttttttttttcttccacgattcagcggtggtgtttgtaggccggctaaacatgacttttactggtgttaaaatcagtc |
2840975 |
T |
|
| Q |
211 |
ttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaagggcattatatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2840976 |
ttcagtctttaggtttgtatatgtgctttagtaagttcaagtttaaaatttgactgttttcatgagaggaaataattaaatatgagaagggcattaaatt |
2841075 |
T |
|
| Q |
311 |
gtgtgtattaaagtatcattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatgatagcaagtgc |
410 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841076 |
gtgtgtattaaagtatgattaaattgtggtttgtttgtgatttgttcagtttgtatgccttcacctctaatggtttaattttcttcatgatagcaagtgc |
2841175 |
T |
|
| Q |
411 |
atat |
414 |
Q |
| |
|
|||| |
|
|
| T |
2841176 |
atat |
2841179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 205 - 414
Target Start/End: Original strand, 2848353 - 2848562
Alignment:
| Q |
205 |
tcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaagggcat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2848353 |
tcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaagggcat |
2848452 |
T |
|
| Q |
305 |
tatattgtgtgtattaaagtatcattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatgatagc |
404 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2848453 |
taaattgtgtgtattaaagtatgattaaattgtggtttgtttgtgatttgttcagtttgtatgccttcacctctaatagtttaattttcttcatgatagc |
2848552 |
T |
|
| Q |
405 |
aagtgcatat |
414 |
Q |
| |
|
|||||||||| |
|
|
| T |
2848553 |
aagtgcatat |
2848562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 2848171 - 2848209
Alignment:
| Q |
179 |
taaacatgacttttactggtgtt-aaatcagtcttcagt |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2848171 |
taaacatgacttttactggtgttaaaatcagtcttcagt |
2848209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 31984397 - 31984458
Alignment:
| Q |
4 |
atggatgcaaacaaagtctttcctattaggtcctatgagc--atgacaaagagaacaacatt |
63 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
31984397 |
atggatgcaaacaaagtctttgctattagaacctttgagcatatgacaaagagaataacatt |
31984458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 6981483 - 6981884
Alignment:
| Q |
1 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6981483 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagtt------------tgcaagagtg |
6981570 |
T |
|
| Q |
101 |
caggttctgtcatggagtgctcttgctgatgtagnnnnnnnnncttccccagttcagcggtggtgtttgtaggccggctaaacatgacttttactggtgt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6981571 |
caggttctgtcatggagtggtcttgctgatgta-tttttttttcttccccggttcagcgatggtgtttgtaggccagctaaacatgacttttactggtgt |
6981669 |
T |
|
| Q |
201 |
taaa-tcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaagcttaaaatttgactgttttcatgagaggaaataattaaatatgagaag |
299 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6981670 |
taaaatcagtcttcagtctttaggtttgtatatgtgctttagtaagttcaaaattaaaatttgactgttttcatgagaagaaataattaaatatgagaag |
6981769 |
T |
|
| Q |
300 |
ggcattatattgtgtgtattaaagtatcattaaattgtggtttgtctgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatg |
399 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6981770 |
ggcattaaattgtgtgtattaaagtatgattaaattgtggtttgtttgtgatttattcagtttgtatgccttcacctctaatggtttaattttcttcatg |
6981869 |
T |
|
| Q |
400 |
atagcaagtgcatat |
414 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6981870 |
atagcaagtgcatat |
6981884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 22291121 - 22291032
Alignment:
| Q |
5 |
tggatgcaaacaaagtctttcctattaggtcctatgagcatgaca---aagagaacaacattagtgaaaacatagttatgcagtagtgtt |
91 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||| ||||||| || | ||||||||||||||||||| || |||| |||| ||||||| |
|
|
| T |
22291121 |
tggatgtaaacaaattctttgctattaggacctacgagcatggcagtgaggagaacaacattagtgaaatcaaagttttgcaatagtgtt |
22291032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 51853455 - 51853322
Alignment:
| Q |
1 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51853455 |
ggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtg |
51853356 |
T |
|
| Q |
101 |
caggttctgtcatggagtgctcttgctgatgtag |
134 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
51853355 |
caggttctgtcatggagtggtcttgctgatgtag |
51853322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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