View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_53 (Length: 429)
Name: NF19530_low_53
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 1156758 - 1156349
Alignment:
| Q |
16 |
tattgagcgatcaatgatgcaatcaatgatttcctcttgtgatgttgaaaacattttttgtagtgatgttcaaatcaccgtgaagtttgtggtacgaaaa |
115 |
Q |
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| T |
1156758 |
tattgagcgattaatgatgcaatcaataatttcctcttgtgatgttgaaaacatattttgtagtgatgttcaaatcaccatcaagttggtcgtaagaaaa |
1156659 |
T |
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| Q |
116 |
tcagatgacaatatattgtatgctctaggggggaatgattttgcaaacttaattataaattttctaacctttccacttggcggagttttaggtagggtac |
215 |
Q |
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| T |
1156658 |
tcggatgacaatatattgtatgccctaggggggaatgattttgcaaacttaattataaattttctaacctttccacttggtggagttttaggtaggttac |
1156559 |
T |
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| Q |
216 |
tagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaagacaagtatttgatttccaaagaagcaaaaaacaggct |
315 |
Q |
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| T |
1156558 |
aagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaagacaagtattttacttccaaagaagcaaagaacaggct |
1156459 |
T |
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| Q |
316 |
tctcgaactacgtatgttgcaatattattgttattatcagtgtgatccttctgatgacagaattattcatgttcaactttacaaaagtgatgaagattgg |
415 |
Q |
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| T |
1156458 |
tcttgaactacgtcttttgcaatattattgtcatcatcagtgtgatccttctgatgacagaattattcatgttcaactttacaaaagtgatgaagattgg |
1156359 |
T |
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| Q |
416 |
agtggtgggg |
425 |
Q |
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| T |
1156358 |
agtggtgggg |
1156349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 346
Target Start/End: Complemental strand, 23250940 - 23250705
Alignment:
| Q |
111 |
gaaaatcagatgacaatatattgtatgctctaggggggaatgattttgcaaacttaattataaattttctaacctttccacttggcggagttttaggtag |
210 |
Q |
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| T |
23250940 |
gaaaatctgatgacattatattatatgctcaagggggacgtgattttgcagagttgattatacgttttttaacatttccattgggtggtgttttacgcaa |
23250841 |
T |
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| Q |
211 |
ggtactagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaagacaagtatttgatttccaaagaagcaaaaaac |
310 |
Q |
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| T |
23250840 |
cttagaagggaatagttctttgggaagtattgatggattgtgcaagagcatagctgatttaaatgaagaaatgtatttcatatctaaggatgcaaagaac |
23250741 |
T |
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| Q |
311 |
aggcttctcgaactacgtatgttgcaatattattgt |
346 |
Q |
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| T |
23250740 |
aggcttctcaagataagtgttttgcaatattattgt |
23250705 |
T |
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