View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_55 (Length: 422)
Name: NF19530_low_55
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 6639481 - 6639848
Alignment:
| Q |
17 |
atcaggttaatattcctatcatctttcca-ttcatatcaaggtaacatagcactaaatatttaatgagttatggccaccatcataattttcttacaatct |
115 |
Q |
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| T |
6639481 |
atcaggttaatattcctatcatctttccaattcatatcaaggtaacatagcactaaatatttaatgagttatggccaccatcataattttcttacaatct |
6639580 |
T |
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| Q |
116 |
caccttaattattaacatcgtagaccaagcaaaaatggagacacacatctctcgttggtccatcttcgatcaagtagatttgcgcaaaatctaattttca |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639581 |
caccttaattatta-catcgtagaccaagcaaaaatggagaaacacatctctcgttggtccatcttcgatcaagtagatttgcgcaaaatctaattttca |
6639679 |
T |
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| Q |
216 |
ctattttggatatgnnnnnnncttacaaaataattgaatttccgtgcttaccgtcattcccnnnnnnngtactacatattctttatc-tttaagttttaa |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
6639680 |
ctattttggatatgtttttttcttacaaaataattgaatttccgtgcttaccgtcattccctttttttgtactacatattctttatcttttaagttttaa |
6639779 |
T |
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| Q |
315 |
cattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639780 |
cattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
6639848 |
T |
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