View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_56 (Length: 419)
Name: NF19530_low_56
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 96 - 413
Target Start/End: Original strand, 43816822 - 43817139
Alignment:
| Q |
96 |
tacgtacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagtgacggctaatatcatttttgaagggttctttaaggaaaatca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816822 |
tacgtacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagtgacggctaatatcatttttgaagggttctttaaggaaaatca |
43816921 |
T |
|
| Q |
196 |
aaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagttt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816922 |
aaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagttt |
43817021 |
T |
|
| Q |
296 |
catcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggataga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817022 |
catcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggataga |
43817121 |
T |
|
| Q |
396 |
agtttttccttcatctca |
413 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
43817122 |
agtttttccttcttctca |
43817139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 97 - 359
Target Start/End: Original strand, 43824765 - 43825021
Alignment:
| Q |
97 |
acgtacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagtgacggctaatatcatttttgaagggttctttaaggaaaatcaa |
196 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || ||||||||||||||||| |||||| ||| ||| ||||||||||||||| |||||||| |
|
|
| T |
43824765 |
acgtacctatactgaattcaaagacgacgacgacggtgagaatagcccaaacagaatgacgggtaaaatc------gaagggttctttaagaaaaatcaa |
43824858 |
T |
|
| Q |
197 |
aagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagtttc |
296 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43824859 |
aagggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccatttcccatgctttttcagcaacgagtttc |
43824958 |
T |
|
| Q |
297 |
atcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctata |
359 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
43824959 |
atcatctctttgaatttgaccatattagattcctcttgttcttgtagcaaaccatttcctata |
43825021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 96 - 270
Target Start/End: Original strand, 43831726 - 43831900
Alignment:
| Q |
96 |
tacgtacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagtgacggctaatatcatttttgaagggttctttaaggaaaatca |
195 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || ||||||||||||||||||| ||| | |||||| || |||||||||||||| || ||||||| |
|
|
| T |
43831726 |
tacgtacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagttacgaccaatatctttgttgaagggttctttgagaaaaatca |
43831825 |
T |
|
| Q |
196 |
aaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
43831826 |
aaagggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccattt |
43831900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43816727 - 43816777
Alignment:
| Q |
1 |
tattcaaatacttaattttcttcgtactatgtctatatattttgtaattgt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816727 |
tattcaaatacttaattttcttcgtactatgtctatatattttgtaattgt |
43816777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 31805467 - 31805414
Alignment:
| Q |
100 |
tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt |
153 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
31805467 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt |
31805414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 50243199 - 50243146
Alignment:
| Q |
100 |
tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt |
153 |
Q |
| |
|
||||||| |||||||| || || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
50243199 |
tacctatgctgaattcgaaaacaacgacaacagtgagaatagcccaaatagagt |
50243146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University