View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_58 (Length: 414)
Name: NF19530_low_58
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 50188711 - 50189125
Alignment:
| Q |
1 |
aattaaaaacagaaaaaatgaagacatattcttaaaccaaacatgttgtatcgtttaaaaatgtgtctagaacatatcacatgaaatgatttatgccgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50188711 |
aattaaaaacagaaaaaatgaagacatattcttaaaccaaacatgttgtatcgtttaaaaatgtgtctagaacatatcacatgaaatgatttatgccgtg |
50188810 |
T |
|
| Q |
101 |
attatccatatttgttttctagtactgcatcatagtactaatcaaagagtcttgaatgacagtgtcttgccagaggatgagtggtttgttgaagtttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50188811 |
attatccatatttgttttctagtactgcatcatagtactaatcaaagagtcttgaatgacagtgtcttgccagaggatgagtggtttgttgaagtttctg |
50188910 |
T |
|
| Q |
201 |
aaataactataaagatgataactgggaatgccgcctttgacaatgtagaggaagatgcttatagtcccacttg----------------atataatcaat |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50188911 |
aaataactataaagatgataactgggaatgccgcctttgacaatgtagaggaagatgcttatagtcccacttgatcagcccaagcataaatataatcaat |
50189010 |
T |
|
| Q |
285 |
gtcattaatccattctcaaggaaagtgattacagcttatcatgttgtagagaccaaaagggaaacaagaaattgaagtataaagagttaatgttatagtc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50189011 |
gtcattaatccattctcaaggaaagtgattacagcttatcatgttgtagagaccaaaagggaaacaagaaattgaagtataaagagttaatgttatagtc |
50189110 |
T |
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| Q |
385 |
taccacgtgatttgt |
399 |
Q |
| |
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| T |
50189111 |
taccacgtgatttgt |
50189125 |
T |
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Back To:
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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 123 - 270
Target Start/End: Complemental strand, 16292734 - 16292588
Alignment:
| Q |
123 |
tactgcatcatagtactaatcaaagagtcttgaatgacagtgtcttgccagaggatgagtggtttgttgaagtttctgaaataactataaagatgataac |
222 |
Q |
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|||||| ||||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
16292734 |
tactgcttcataatactaatctaagtgacttgaat-acagtgtcttgccagaggatgagtggtttgttgaagtttctgaaattgctatgaagatgttaac |
16292636 |
T |
|
| Q |
223 |
tgggaatgccgcctttgacaatgtagaggaagatgcttatagtcccac |
270 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
16292635 |
tgggaaagccgccttcgacaatgtagatgaagatgcttatagtcccac |
16292588 |
T |
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