View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_59 (Length: 411)
Name: NF19530_low_59
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 9580317 - 9580081
Alignment:
| Q |
4 |
ggaaaattaaatgtaacacaagagattcgtctcttta-ttaagtaaga----gagagtggagtaagggatcgggaggtaatcataattggttttcaaact |
98 |
Q |
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| T |
9580317 |
ggaaaattaaatgtaacacgtgagatccgtctctttaattaagagagattgagagagtggagtaagggattgggaggtaatcataattggttttcaaact |
9580218 |
T |
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| Q |
99 |
ggtttagtagaaatatgggcggaggcgagggcacatgtttttggagtgacgaataggttggtggagtcaccttaaaaaggaggttcaactgactttattc |
198 |
Q |
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| T |
9580217 |
ggtttcgtagaaatatggggggaagcgagggcacatttttttggagcgacgaataggttggtggagtcacctt-aaaaggagtttcgactgactttattc |
9580119 |
T |
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| Q |
199 |
cctatcattgtgtaaggaggctggagtttcagatacga |
236 |
Q |
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| T |
9580118 |
cctatcattgtgtaaggaggctagagtttcagatacga |
9580081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 9580028 - 9579872
Alignment:
| Q |
238 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagggaaaggagtagggatatgatagcatgggaagaggagaattcgaatatgtatt |
337 |
Q |
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| T |
9580028 |
gagagctatatggtcgggaaggagacatgttgaacacaatgttggagggaagggagtagggatatgatagcatgggaagaggataattcgaatatatatt |
9579929 |
T |
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| Q |
338 |
ctgtcaagtcagattataatgttctaaacgtcgagagtgttggtgatgaggagtttc |
394 |
Q |
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| T |
9579928 |
ctgtcaagtcagcttataatgttctaaacggcgagagtgttggtgatgaggagtttc |
9579872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 9585821 - 9585620
Alignment:
| Q |
4 |
ggaaaattaaatgtaacacaagagattcgtctcttta-ttaagtaagagagagtggagtaagggatcgggaggtaatcataattggttttcaaactggtt |
102 |
Q |
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| T |
9585821 |
ggaaaattaaatgtaacacgagatactcgtctctttggttaagagattgagagtggagtaggggatcgggagataatcataattggttttcaaaccgg-- |
9585724 |
T |
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| Q |
103 |
tagtagaaatatgggcggaggcgagggcacatgtttttggagtgacgaataggttggtggagtcaccttaaaaaggaggttcaactgactttattcccta |
202 |
Q |
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| T |
9585723 |
--------------ggggaggtgaggacacat--ttttggagcgacgaatgggttggtggaaccacattaaaaaggaggatcgatcggctttattcccta |
9585640 |
T |
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| Q |
203 |
tcattgtgtaaggaggctgg |
222 |
Q |
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| T |
9585639 |
tcattgtgtaaggagcctgg |
9585620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 32718100 - 32718236
Alignment:
| Q |
89 |
ttttcaaactggtttagtagaaatatgggcggaggcgagggcacatgtttttggagtgacgaataggttggtggagtcaccttaaaaaggagg-ttcaac |
187 |
Q |
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|||| |||| || |||||||||||||||| ||||| ||| ||| |||||||| ||| |||| |||||||| |||||||||||||||| || || | | |
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| T |
32718100 |
tttttaaaccgggttagtagaaatatggggagaggcaaggatacagttttttggactgatgaatgggttggtgcagtcaccttaaaaagggggtttgacc |
32718199 |
T |
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| Q |
188 |
tgactttattccctatcattgtgtaaggaggctggagt |
225 |
Q |
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| T |
32718200 |
tga-tttattccctgtcattatgtaaggaagctagagt |
32718236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 9585562 - 9585515
Alignment:
| Q |
238 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagg |
285 |
Q |
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| T |
9585562 |
gagagctatatggttgggaaggagacacgctgaacacaatattggagg |
9585515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 32718297 - 32718340
Alignment:
| Q |
242 |
gctatatggttgggaaggagacatgttgaacacaatgttggagg |
285 |
Q |
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| T |
32718297 |
gctatatagttgggatggagacatgttgaacacaatgttggagg |
32718340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 9585468 - 9585425
Alignment:
| Q |
351 |
ttataatgttctaaacgtcgagagtgttggtgatgaggagtttc |
394 |
Q |
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| T |
9585468 |
ttataatgttctaaatggcgagagtgttggtgatggggagtttc |
9585425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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