View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_60 (Length: 411)
Name: NF19530_low_60
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 58 - 396
Target Start/End: Complemental strand, 1104918 - 1104579
Alignment:
| Q |
58 |
aaaataatgaaagtaatttagattatttattcggatgaaaaacatattttcaaagatgtcatatgaattaattctatgaaaatttgttggcagcctaaat |
157 |
Q |
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| T |
1104918 |
aaaataatgaaagtaatttagattatttattcggatgaaaaacattatttcaaagatgtcatatgaattaattctatgaaaatttgttggcagcctaaat |
1104819 |
T |
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| Q |
158 |
atttatgtagggattagcaaaaacagacacaaatataacc-aaataaataaacattaaagaaccataacacatttacctactgtggaagcatccattcga |
256 |
Q |
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| T |
1104818 |
atttatgtagggattaggaaaaacagacacaaatataacctaaataaataaacattaaagaaccataacacatttacctactgtggaagcatccattcga |
1104719 |
T |
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| Q |
257 |
acataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttg |
356 |
Q |
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| T |
1104718 |
acataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttg |
1104619 |
T |
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| Q |
357 |
aataagccatgcaagaacaattttccaagcatttgttctt |
396 |
Q |
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| T |
1104618 |
aataagccatgcaagaacaattttccaagcatttgttctt |
1104579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 227 - 396
Target Start/End: Complemental strand, 1088195 - 1088026
Alignment:
| Q |
227 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
326 |
Q |
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| T |
1088195 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaac |
1088096 |
T |
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| Q |
327 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttctt |
396 |
Q |
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| T |
1088095 |
cactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattctt |
1088026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 390
Target Start/End: Complemental strand, 1047721 - 1047558
Alignment:
| Q |
227 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
326 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| |||||| | || | | | |||||||| | |||||||||||||||||||||||||||| |
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| T |
1047721 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaaccatatagaacaac |
1047622 |
T |
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| Q |
327 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcattt |
390 |
Q |
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|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047621 |
cactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcattt |
1047558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 396
Target Start/End: Complemental strand, 1072531 - 1072365
Alignment:
| Q |
227 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
326 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| |||||| | || | ||| ||| | || | |||||||||||||||||||| ||||| | |
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| T |
1072531 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacatc |
1072432 |
T |
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| Q |
327 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttctt |
396 |
Q |
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|||||||||| | | |||| |||||||||||||||||| |||||||||| |||||||||||| ||||| |
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| T |
1072431 |
cactaccatcactc---acatttaagtttgaataagccatacaagaacaatcttccaagcatttattctt |
1072365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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