View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_61 (Length: 410)
Name: NF19530_low_61
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 27708125 - 27708500
Alignment:
| Q |
17 |
acaagatagattagttaatcttaaaaatgaatggtcgtatgatttctggaaaagaattttagatctaatattgagaaagnnnnnnncctgttttttagat |
116 |
Q |
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| T |
27708125 |
acaagatagattagttaatctaaaaaatgaatggtcgtatgatttctggaaaagatttttagatctaatattgagaaagaaaataacctgttttttagat |
27708224 |
T |
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| Q |
117 |
ctaaaggttgggaaatttgttgaattcttaatcttagattatttgcaggttttcctttctaattcatcttgttcggaaatatgaaaatgcaaggttgta- |
215 |
Q |
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| T |
27708225 |
ctaaaggttgggaaatttgttgaattcttaatcttagattatttgcaggttttcctttctaattcatcttgttcggaaatatgaaaatgcaaggttgtat |
27708324 |
T |
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| Q |
216 |
----tattttattttattttaacaaaatattgttacttgttatggggttgtat-aaaaatgaggggaacaagatgaagaggaatagtatgatatttggta |
310 |
Q |
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| T |
27708325 |
attttattttattttattttaacaaaatattgttacttgttacggggttgtataaaaaatgaggggaacaagatgaagaggcatagtatgatatttggtg |
27708424 |
T |
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| Q |
311 |
aagaaga----atacttcctcttgtttttcagaaaattgtgcagggtggagtcaaacaagaaaagggataaaattg |
382 |
Q |
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| T |
27708425 |
aagaagaatatatacttcctcttgtttttcaaaaaattgtgcagggtggagtcaaacaagaaaagggataaaattg |
27708500 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 42293192 - 42293252
Alignment:
| Q |
172 |
tttctaattcatcttgttcggaaatatgaaaatgcaaggttgtatattttattttatttta |
232 |
Q |
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| T |
42293192 |
tttctaattcatcttgtttggaaatatgaatacgaaaagttgtatattttaatttttttta |
42293252 |
T |
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