View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_62 (Length: 409)
Name: NF19530_low_62
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_62 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 45845742 - 45846120
Alignment:
| Q |
13 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcatac |
112 |
Q |
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| T |
45845742 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaatcatgatttcatac |
45845841 |
T |
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| Q |
113 |
caccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttt |
212 |
Q |
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| T |
45845842 |
caccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttt |
45845941 |
T |
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| Q |
213 |
tcttgtgtgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttgattcccatatt |
312 |
Q |
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| T |
45845942 |
tcttgtgcgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttgattcccatatt |
45846041 |
T |
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| Q |
313 |
gaggtgagaaacaagaaaatagtttatgggaatgtgaagaaaaattgctaaagtagcacaaagtgtgagaggcagagta |
391 |
Q |
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| T |
45846042 |
gaggtgagaaacaagaaaatagtttatgggaatgtgaagaaaaattgctaaagtagcacaaagtgtgagaggcagagta |
45846120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 24143 - 23997
Alignment:
| Q |
245 |
atcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttgattcccatattgaggtgagaaacaagaaaatagtttatgggaa |
344 |
Q |
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| T |
24143 |
atcaaagaagcaacaaggttgaaatttgtccataccccacttaaagcaactccttttatacccaaattaagatatataacaagaaaataatttattggta |
24044 |
T |
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| Q |
345 |
tgtgaagaaaaattgctaaagtagcacaaagtgtgagaggcagagta |
391 |
Q |
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| T |
24043 |
tgtgaagaaggattgaaaaagttgcacaaagtgtaagaggaagagta |
23997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 2990492 - 2990296
Alignment:
| Q |
32 |
gtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaa |
131 |
Q |
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| T |
2990492 |
gtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtaccaccaccattcgagacaaa |
2990393 |
T |
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| Q |
132 |
cagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttttcttgtgtgtgccaga |
228 |
Q |
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| T |
2990392 |
ccgaaatgcagcttggaattgctaaattcaaaagcgatttccatcctttgaaacaagcagaggaaattccactccatgttttcttgtgtgttccaga |
2990296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 2990201 - 2990153
Alignment:
| Q |
323 |
acaagaaaatagtttatgggaatgtgaagaaaaattgctaaagtagcac |
371 |
Q |
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| T |
2990201 |
acaagaaaatagtttataggaatgtgaagaagaatagacaaagtagcac |
2990153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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