View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_64 (Length: 405)
Name: NF19530_low_64
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 8673443 - 8673064
Alignment:
| Q |
11 |
cacagaagatacattagaaacaaccggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaa |
110 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673443 |
cacagaagatacattagaaacaactggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaa |
8673344 |
T |
|
| Q |
111 |
tttaggcatacttgttgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcacta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8673343 |
tttaggcatacttgttgttctccagtaaaagaggtattatattatcacatttcatcaatatttccgcttatatttatttttacatgtttgagtctcacta |
8673244 |
T |
|
| Q |
211 |
acttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673243 |
acttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacat |
8673144 |
T |
|
| Q |
311 |
agcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673143 |
agcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagt |
8673064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 8719736 - 8719361
Alignment:
| Q |
11 |
cacagaagatacattagaaacaaccggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaa |
110 |
Q |
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|||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
8719736 |
cacagaagatacatcagaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaaacatatcttagaagacattccaaagaa |
8719637 |
T |
|
| Q |
111 |
tttaggcatacttgttgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcacta |
210 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |||||||| | | ||| ||| ||||| |||||||||||||||||||||||||||| |
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| T |
8719636 |
tttaggcatacttattgttctccagtaaaagaggtattatactatcacatatatttaacatttttacttatctttatttttacatgtttgagtctcacta |
8719537 |
T |
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| Q |
211 |
acttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacat |
310 |
Q |
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||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8719536 |
acttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttagcacat |
8719437 |
T |
|
| Q |
311 |
agcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagt |
390 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
8719436 |
agcatttcaaactttctagattaat----tcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagt |
8719361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 27 - 390
Target Start/End: Complemental strand, 8591877 - 8591524
Alignment:
| Q |
27 |
gaaacaaccggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcatacttgtt |
126 |
Q |
| |
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|||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || |
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| T |
8591877 |
gaaacagctggtgctctttgggacatatttaaaagagaagatactgcaaagttagaagcatatcttcaaaaacattgcaaagaatttaggcatacttttt |
8591778 |
T |
|
| Q |
127 |
gttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcactaacttctttgttgctta |
226 |
Q |
| |
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||||| ||| || ||||||||||||||| |||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||| |
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| T |
8591777 |
tctctccggtagaaaaggtattatattatcgcatttcatcaacgtttccacttatcttg-------catatttgagtctcactaacttctttgttgctta |
8591685 |
T |
|
| Q |
227 |
ggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacatagcatttcaaactttc |
326 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
8591684 |
ggttattcatcctattcatgaccaatgtttttatttgacttttgaccataagaagaagctggagaaagaatttggttagcacgtagcatttcaaactttc |
8591585 |
T |
|
| Q |
327 |
tagattaattaaatcatcatgtgactagttatttacaagaatc-ttaatcaattacaggtgtagt |
390 |
Q |
| |
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||| ||||| |||||| | |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
8591584 |
tagcttaat----gcatcatacaattagttatttacatgaatctttaatcaattacaggtgtagt |
8591524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 23439451 - 23439828
Alignment:
| Q |
11 |
cacagaagatacattagaaacaaccggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaa |
110 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439451 |
cacagaagatacatcagaaacagctagtgcactttgggacatatttcgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaa |
23439550 |
T |
|
| Q |
111 |
tttaggcatacttgttgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcacta |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439551 |
tttaggcatacttattgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcacta |
23439650 |
T |
|
| Q |
211 |
acttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttagcacat |
310 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
23439651 |
acttcttttttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcat---aagaagctgaaggaagagtttggttagcacat |
23439747 |
T |
|
| Q |
311 |
agcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtt |
391 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439748 |
agcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtt |
23439828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 55410343 - 55410251
Alignment:
| Q |
213 |
ttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggttag |
305 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| || | || |||||||||||| |
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| T |
55410343 |
ttctttgttggttaggttgtacatccaattcatgaccaatgtttttatttgactttggagcacaagaataagttgaaggaggagtttggttag |
55410251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 55410510 - 55410425
Alignment:
| Q |
45 |
tgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcatacttgttgttc |
130 |
Q |
| |
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||||| ||||| || ||||| || |||| |||||||| |||||||||||||||| | || |||||||| |||||||||| |||||| |
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|
| T |
55410510 |
tgggatatatttcggagagaggacactgaaaagttaggagcatatcttagaaaacactcgaaagaattcaggcatacttattgttc |
55410425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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