View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_67 (Length: 396)
Name: NF19530_low_67
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 34316875 - 34316507
Alignment:
| Q |
10 |
tcaatatagatagatctattacgtacatcagcactgatatttccatattcgcatggcaaatcgagcttgaaggcattatcgtcgatcttctcaagaactt |
109 |
Q |
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| T |
34316875 |
tcaatatagatagatctactacgtacatcagcactgatatttccatattcggatggcaaatcgagcttgaaggcattaacgtcgatcttctcaagaactt |
34316776 |
T |
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| Q |
110 |
gaaaaggttcatctcctcttgggttcagtttggattttctttgatttggaaaatgttcaatcctcatattagcttgctttgcataccattcattcttctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34316775 |
gaaaaggttcatctcctcttgggttcagtttggattttctttgatttggaaaatgttcaatcctcatattagcttgctttgcatactattcattcttctt |
34316676 |
T |
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| Q |
210 |
ctgactgttggctcaaacctttgcatgcaactccctaatagcatcggtcc--nnnnnnnnnaccatccaaattaggaaagtcattagtaggcaaatttaa |
307 |
Q |
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| T |
34316675 |
ctgattgttggctcgaacctttgcatgcaactccctaatagcatcggtcctttttttttttaccatccaaattaggaaagtcattagtaggcaaagttaa |
34316576 |
T |
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| Q |
308 |
gatatccaaaggattaaaagcatattcaatttcaaatggagaatgaaaagtagtagagtgaaatgttct |
376 |
Q |
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| T |
34316575 |
gatatccaaaggattaaaaccatattcaatttcaaatggagaatgagaagtagtagagtgaaatgttct |
34316507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 16935110 - 16935218
Alignment:
| Q |
40 |
gcactgatatttccatattcgcatggcaaatcgagcttgaaggcattatcgtcgatcttctcaagaacttgaaaaggttcatctcctcttgggttcagtt |
139 |
Q |
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| T |
16935110 |
gcactaatatttccacactcacttggcaaatccagcttgtaggcattatcgttgatcttctctagaatatgaaaaggtccatctcctcttgggttcagtt |
16935209 |
T |
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| Q |
140 |
tggattttc |
148 |
Q |
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||||||||| |
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| T |
16935210 |
tggattttc |
16935218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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