View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_68 (Length: 394)
Name: NF19530_low_68
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 53614106 - 53613721
Alignment:
| Q |
1 |
gatgttatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgc |
100 |
Q |
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| T |
53614106 |
gatgttatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgc |
53614007 |
T |
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| Q |
101 |
agcagatgttagactgtcagtnnnnnnnntgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatatttaccttt |
200 |
Q |
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| T |
53614006 |
agcagatgttagactgtcagtaaaaaaaatgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatattaaccttt |
53613907 |
T |
|
| Q |
201 |
tctagagtctggcaacacaaatgaacttttactcttcatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacat |
300 |
Q |
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| T |
53613906 |
tctagagtctggcaacacaaatgaacttttactcttaatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacat |
53613807 |
T |
|
| Q |
301 |
atcagctgaggtcatactcattttatcatcacatattctcccttttttccttttattttgctttattattaaaccaagttcatttc |
386 |
Q |
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| T |
53613806 |
atcagctgaggtcatactcattttatcatcacaaattctcccttttttccttttattttgctttattattaaaccaagttcatttc |
53613721 |
T |
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