View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_69 (Length: 393)
Name: NF19530_low_69
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 4749161 - 4748792
Alignment:
| Q |
7 |
tcgaagaaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaacttt |
106 |
Q |
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| T |
4749161 |
tcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaacttt |
4749062 |
T |
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| Q |
107 |
ttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
206 |
Q |
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| T |
4749061 |
ttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
4748962 |
T |
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| Q |
207 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga |
306 |
Q |
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| T |
4748961 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga |
4748862 |
T |
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| Q |
307 |
agcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtttctggcgagcaaact |
376 |
Q |
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| T |
4748861 |
agcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaact |
4748792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 4756992 - 4756637
Alignment:
| Q |
14 |
aaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtct |
113 |
Q |
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| T |
4756992 |
aaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatct |
4756893 |
T |
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| Q |
114 |
ctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcgtg |
210 |
Q |
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| T |
4756892 |
ctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtc |
4756793 |
T |
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| Q |
211 |
accatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagca |
310 |
Q |
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| T |
4756792 |
accatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatga |
4756693 |
T |
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| Q |
311 |
gggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtttctgg |
366 |
Q |
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|||||||| |||||||| || ||||| |||| || ||||||||||| ||||| |
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| T |
4756692 |
gggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctgg |
4756637 |
T |
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