View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_7 (Length: 713)
Name: NF19530_low_7
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Original strand, 26136722 - 26137415
Alignment:
| Q |
1 |
ttcaatttcaaacaatctcttccccttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136722 |
ttcaatttcaaacaatctcttccacttcagtcttcttcttcttctctcacgatcacaaccaccacagtcacaaagcattcagctttgttttctgtcatca |
26136821 |
T |
|
| Q |
101 |
tcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| || |||||||| || ||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
26136822 |
tcaccgattcttcctctcaataaacaactagggttccatcttttcctcctctacttaatccgctgtgagcattctggcttttcctactctttcatattcg |
26136921 |
T |
|
| Q |
201 |
cgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
26136922 |
cgcacataacatgtttgtgaaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaattttaactatccttatgtttttatgtaattaga |
26137021 |
T |
|
| Q |
301 |
tgttggaataatatatcatagtactaccctttgatactcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26137022 |
tgttggaataatatatcatagtactaccctttgatgctcagttttagaatctcttgctgataactcttttttcaaccaattgattgaaattcaaaaaaca |
26137121 |
T |
|
| Q |
401 |
ttgaataaaaggaactgcaagcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgccataaaatatcttttgtttgcaataaacgacga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26137122 |
ttgaataaaaggaactgcaagcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgctataaaatatcttttgtttgcaataaacgacga |
26137221 |
T |
|
| Q |
501 |
ctgcaaactcggcatatacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatatc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26137222 |
ctgcaaactcggcatatacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatatc |
26137321 |
T |
|
| Q |
601 |
atattgtttaccgcgtagattgagatatattggttattattgtatccaacgtatctgtctagtcaacgtttagtactggaggttgagtccttta |
694 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
26137322 |
atactgtttaccgcgtagattgagatatattggttattattgtatccaacgtatctgtctcgtcaacgtttagtactggaggtcgagtccttta |
26137415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 25578415 - 25579013
Alignment:
| Q |
1 |
ttcaatttcaaacaatctcttccccttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25578415 |
ttcaatttcaaacaatctcttccacttcagtcttcttcttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgttatca |
25578514 |
T |
|
| Q |
101 |
tcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578515 |
tcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattcg |
25578614 |
T |
|
| Q |
201 |
cgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25578615 |
cgcacataacatgtttgtgaaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaattttaactattcttatgtttttatgtaattaga |
25578714 |
T |
|
| Q |
301 |
tgttggaataatatatcatagtactaccctttgatactcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578715 |
tgttggaataatatatcatagtactaccctttgatgctcagttttagaatatcttgctgataactcttttttcaaccaattgattgaaattcaaaaaaca |
25578814 |
T |
|
| Q |
401 |
ttgaataaaaggaactgcaagcaaacatgaaagcaaagtccaacaacaagtattcgaaatgtggtgccataaaatatcttttgtttgcaataaacgacga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25578815 |
ttgaataaaaggaactgcaagcaaacatgaaagcaaagtccaacaacatgtattcgaaatgtggtgctataaaatatcttttgtttgcaataaacgacga |
25578914 |
T |
|
| Q |
501 |
ctgcaaactcggcatatacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578915 |
ctgcaaactcggcatatacattggacacaataatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacatttacacaaacaaatat |
25579013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 33852905 - 33853255
Alignment:
| Q |
1 |
ttcaatttcaaacaatctcttccccttcagtcttctccttcttctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33852905 |
ttcaatttcaaacaatctcttccacttcagtcttct------tctctcacgatcacgaccaccacagtcacaaagcattcagctttgttttctgtcatca |
33852998 |
T |
|
| Q |
101 |
tcaccgattcttcctctcaattaacaactagggtttcatcttt-ttcttctctactttattcgctgtgagcattcttgctttttctactctttcatattc |
199 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33852999 |
tcaccgattcttcctctcaattaacaattagggtttcatctttattcttctctactttattcgctgtgagcattcttactttttctactctttcatattc |
33853098 |
T |
|
| Q |
200 |
gcgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattttaactattcctatgtttttatgtaattag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33853099 |
gcgcacataacatgtttgtgaaatgtcctctgtgaattctctgtatagaataaccctgcaagctcaaattttaactattcttatgtttttatgtaattag |
33853198 |
T |
|
| Q |
300 |
atgttggaataatatatcatagtactaccctttgatactcagttttagaatatcttg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33853199 |
atgttggaataatatatcatagtactaccctttgatgctcagttttagaatatcttg |
33853255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 5884747 - 5884795
Alignment:
| Q |
361 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
409 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
5884747 |
taactcttttttcaagcaattgatggaaatttagaaaacattgaataaa |
5884795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 5885189 - 5885242
Alignment:
| Q |
532 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
586 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
5885189 |
aatgagttggaaaggtatttggaggat-gtcctgaagatgatgtttctacattta |
5885242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 20484636 - 20484684
Alignment:
| Q |
361 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
409 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
20484636 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
20484684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 27709200 - 27709152
Alignment:
| Q |
361 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
409 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
27709200 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
27709152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 27708758 - 27708704
Alignment:
| Q |
532 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
586 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
27708758 |
aatgagttggaaaggtatctggaggatggtcctgaagatgatgtttctacattta |
27708704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 17385537 - 17385489
Alignment:
| Q |
361 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
409 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
17385537 |
taactcttttttcaagcaattgatggaaattcagaaaacattgaataaa |
17385489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 17385095 - 17385041
Alignment:
| Q |
532 |
aatgagttggtaaggtatttggaggatggtcgtgaagatgatgtacctacattta |
586 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17385095 |
aatgagttggaaaggtatctggaggatggtcctgaagatgatgtttctacattta |
17385041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 51511910 - 51511862
Alignment:
| Q |
361 |
taactcttttttcaaccaattgattgaaattcaaaaaacattgaataaa |
409 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
51511910 |
taactcttttttcaagcaattgatggaaattcataaaacattgaataaa |
51511862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 575
Target Start/End: Complemental strand, 51511473 - 51511432
Alignment:
| Q |
534 |
tgagttggtaaggtatttggaggatggtcgtgaagatgatgt |
575 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
51511473 |
tgagttggaaaggtatctggaggatggtcctgaagatgatgt |
51511432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University