View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_70 (Length: 389)
Name: NF19530_low_70
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_70 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 3810920 - 3810530
Alignment:
| Q |
1 |
tcttgattcttgaagcgcataaatcaaattggagtaacacttctgcaannnnnnnaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaa |
100 |
Q |
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| T |
3810920 |
tcttgattcttgaagcgtataaatcaaattggagtaacacttctgcaatttttttaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaa |
3810821 |
T |
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| Q |
101 |
tcctaagaacaacaaaatcccttaaaaatgacaaactagctctataaagttcgaaactagg--nnnnnnnnggtgaacaaagcaagcacaaaacacttgc |
198 |
Q |
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| T |
3810820 |
tcctaagaacaacaaaatcccttaaaaatgacaaactagctctataaagttcgaaactaggaaaaaaaaaaggtgaacaaagcaagcacaaaacacttgc |
3810721 |
T |
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| Q |
199 |
attgcattctcattgtaatcatgctaatgatgcattaaaactttgaagataatctgtgacttcttgaatcagctcagaatcacaacttaattgagtagca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3810720 |
attgcattctcattgtaatcatgctaatgatgcattaaaactttgaagataatatgtgacttcttgaatcagttcagaatcacaacttaattgagtaggt |
3810621 |
T |
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| Q |
299 |
atgatttcatgaatatatatcatatctttattcatgagaggagttttgtacatgtttgatcccttaatcttcattatttcaaccatgcatg |
389 |
Q |
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|| || || |||||| ||||||||| ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
3810620 |
atcccatcttggttatatagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatg |
3810530 |
T |
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