View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_71 (Length: 388)
Name: NF19530_low_71
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 6235658 - 6235414
Alignment:
| Q |
1 |
atgaataaattatattgtctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggatcatcatgtgctattctgctacctaa |
100 |
Q |
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| T |
6235658 |
atgaataaattatattgtctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggatcatcatgtgctattctgctacctaa |
6235559 |
T |
|
| Q |
101 |
ctattaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataannnnnnnctaactgttgatatcaaaaagaaatttatatggaaa |
200 |
Q |
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| T |
6235558 |
ctattaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataattttttt-taaccgttgatatcaaaaagaaatttatatgaaaa |
6235460 |
T |
|
| Q |
201 |
tgtgtatgttttatgattgagtacatttatatttaaagcataatca |
246 |
Q |
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| T |
6235459 |
tgagtatgttttatgattgagtacatttatatttaaagcataatca |
6235414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 6235330 - 6235292
Alignment:
| Q |
335 |
tatatctgattattgatgtatttgatcatgttccttcat |
373 |
Q |
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| T |
6235330 |
tatatctaattattgatgtatttgatcatgttccttcat |
6235292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 2973215 - 2973296
Alignment:
| Q |
165 |
ctaactgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
246 |
Q |
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| T |
2973215 |
ctaactgttgatatcaaaaagaaatttatatgaaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2973296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 2975469 - 2975539
Alignment:
| Q |
170 |
tgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
246 |
Q |
| |
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| T |
2975469 |
tgttgatatcaaaaagaaat------ggaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2975539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 2972852 - 2972908
Alignment:
| Q |
18 |
tctccttataagcacaatggtactaggagtgaggcatctgtattgagatttaatggat |
75 |
Q |
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| T |
2972852 |
tctccttctaagcataatgata-taggagtgaggcatctgtattgagatttaatggat |
2972908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 373
Target Start/End: Original strand, 2975638 - 2975677
Alignment:
| Q |
334 |
atatatctgattattgatgtatttgatcatgttccttcat |
373 |
Q |
| |
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|
| T |
2975638 |
atatatctgaatattgatgtatttgatcatgttccttcat |
2975677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 373
Target Start/End: Original strand, 2973404 - 2973432
Alignment:
| Q |
345 |
tattgatgtatttgatcatgttccttcat |
373 |
Q |
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| T |
2973404 |
tattgatgtatttgatcatgttccttcat |
2973432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 6026831 - 6026670
Alignment:
| Q |
73 |
gatcatcatgtgctattctgctacctaacta----ttaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataannnnnnnctaa |
168 |
Q |
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||||| ||||||||||||| ||||||||||| |||||||| ||||| |||| ||||| |||||| ||||||| | ||||| |||| |||| |
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| T |
6026831 |
gatcaccatgtgctattctactacctaactaactattaataatctgataggcaattcaaactggtgtgaatccta-catgtgaaaataacaaatatctaa |
6026733 |
T |
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| Q |
169 |
ctgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatattt |
234 |
Q |
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|||||||| ||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||| |
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| T |
6026732 |
ttgttgataataaaaagaaatttatatggaaatgagtacgcttt---attgagtacatatatattt |
6026670 |
T |
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