View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_75 (Length: 377)
Name: NF19530_low_75
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 44347859 - 44347503
Alignment:
| Q |
7 |
cataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataattacactccggttgtgactgtgac |
106 |
Q |
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| T |
44347859 |
cataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataattacactccggttgtgactgtgac |
44347760 |
T |
|
| Q |
107 |
cgtgaatgtaggtccatgatgtagctata-tattgttttactgtggacatctttcacattctgcctaatttcactgtgttatttactttccaacttgttt |
205 |
Q |
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| T |
44347759 |
cgtgaatgtaggtccatgatgtagctataatattgttttactgtggacatctttcacattctgcctaatttcactgtattatttactttccaacttgttt |
44347660 |
T |
|
| Q |
206 |
tttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagttatcctataagaacttctctaccaaatatttt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44347659 |
tttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagttatcctacaagaacttctctaccaaatatttt |
44347560 |
T |
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| Q |
306 |
gtgggtaatacgtattgttgaggaagtgatatcgtataatcaacgagcttatatatt |
362 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
44347559 |
gtgggtaatacgtattgttgaggaagtgataccgtataatcaatgagcttatatatt |
44347503 |
T |
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