View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_80 (Length: 366)
Name: NF19530_low_80
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_80 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 43704537 - 43704210
Alignment:
| Q |
27 |
aagccttctatcacaaatcttcctccttcaagtccctttgttcactattcttgaatactttttcaacctgggccccgttcttgaattcagttaactcttt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
43704537 |
aagccttctatcacaaatcttcctccttcaagtccctttgttcactattcttgaatactttctcaacctgggccccattcttgaattcagttaactcttt |
43704438 |
T |
|
| Q |
127 |
ctcctttgaactagtttcaccactaaccttgtcatcaaagtgtggattcatatgcttgaattcagttgattcttccactttggaaccattttctttactc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704437 |
ctcctttgaactagtttcaccactaaccttgtcatcaaagtgtggattcatatgcttgaattcagttgattcttccactttggaaccattttctttactc |
43704338 |
T |
|
| Q |
227 |
acattggatacttcatcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatact |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704337 |
acattggatacttcatcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatact |
43704238 |
T |
|
| Q |
327 |
tgtcgaaatgacctttgttagtattatc |
354 |
Q |
| |
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|||||||||||||||||||| ||||||| |
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| T |
43704237 |
tgtcgaaatgacctttgttaatattatc |
43704210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 43715508 - 43715181
Alignment:
| Q |
27 |
aagccttctatcacaaatcttcctccttcaagtccctttgttcactattcttgaatactttttcaacctgggccccgttcttgaattcagttaactcttt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
43715508 |
aagccttctatcacaaatcttcctccttcaagtccctttgttcactattcttgaatactttctcaacctgggccccattcttgaattcagttaactcttt |
43715409 |
T |
|
| Q |
127 |
ctcctttgaactagtttcaccactaaccttgtcatcaaagtgtggattcatatgcttgaattcagttgattcttccactttggaaccattttctttactc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715408 |
ctcctttgaactagtttcaccactaaccttgtcatcaaagtgtggattcatatgcttgaattcagttgattcttccactttggaaccattttctttactc |
43715309 |
T |
|
| Q |
227 |
acattggatacttcatcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatact |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715308 |
acattggatacttcatcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatact |
43715209 |
T |
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| Q |
327 |
tgtcgaaatgacctttgttagtattatc |
354 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
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| T |
43715208 |
tgtcgaaatgacctttgttaatattatc |
43715181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 43687628 - 43687352
Alignment:
| Q |
81 |
atactttttcaacctgggccccgttcttgaattcagttaactctttctcctttgaactagtttcaccactaaccttgtcatcaaagtgtggattcatatg |
180 |
Q |
| |
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||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | || |
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| T |
43687628 |
atactttctcaacctgacccccattcttgaattcagttaactctttctcctttgaactagtttcatcactaaccttgtcatcaatttgtggattgacatt |
43687529 |
T |
|
| Q |
181 |
cttgaattcagttgattcttccactttggaaccattttcttt---actcacattggatacttcatcaactgtaggtccataagcccaactgcatactaag |
277 |
Q |
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|||||||||||||| | |||| | |||||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
43687528 |
tttgaattcagttgaattttcctccttggaaccattttcttcttcactcactttggatacttgatcagctgtaggtccataagcccaactgcatactaag |
43687429 |
T |
|
| Q |
278 |
taatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttagtattatc |
354 |
Q |
| |
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||||||| |||||| ||| ||||||||||| |||||||||| |||| |||||||||||||| |||||| ||||||| |
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| T |
43687428 |
taatacagtagattaagaacattaattccagctataacccataaatatttgtcgaaatgacccttgttaatattatc |
43687352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 43729111 - 43728915
Alignment:
| Q |
158 |
tcatcaaagtgtggattcatatgcttgaattcagttgattcttccactttggaaccattttctttactcacattggatacttcatcaactgtaggtccat |
257 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||| |||| | | |||||| ||||||| | ||||| || ||||||| ||||||||||||||||| |
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| T |
43729111 |
tcatcaaatagtggattcaccttcttgaattcagttgaatctttctccttggaatcattttcgtcgctcaccttagatacttgatcaactgtaggtccat |
43729012 |
T |
|
| Q |
258 |
aagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttagtattatc |
354 |
Q |
| |
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||||||||||||| ||||| |||||| | ||| |||||| ||| |||| |||||||| ||| ||||||||| || |||| |||||| ||||||| |
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| T |
43729011 |
aagcccaactgcaaactaaaaaatacagcaaattaagagcactaactccagctataaccatatagtacttgtcgtaacgacccttgttaatattatc |
43728915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 43729187 - 43729109
Alignment:
| Q |
67 |
ttcactattcttgaatactttttcaacctgggccccgttcttgaattcagttaactctttctcctttgaactagtttca |
145 |
Q |
| |
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||||||| ||||||||||||| ||| |||| | || ||||||| ||| |||||||||||| | ||||||||||||||| |
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| T |
43729187 |
ttcactaatcttgaatactttctcagcctgaccaccattcttgatttctgttaactctttcccatttgaactagtttca |
43729109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 23329 - 23432
Alignment:
| Q |
242 |
tcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctt |
341 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||| | || ||| || ||| |||||||| |||||| |||| | |||||||| |||||||| | |
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| T |
23329 |
tcaactgcaggtccataagcccaactgcaaactagataatagagtatattaagggcactaattccagctataagccaagagtacttgtcaaaatgaccct |
23428 |
T |
|
| Q |
342 |
tgtt |
345 |
Q |
| |
|
|||| |
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|
| T |
23429 |
tgtt |
23432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 25274399 - 25274296
Alignment:
| Q |
242 |
tcaactgtaggtccataagcccaactgcatactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctt |
341 |
Q |
| |
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||||||| ||||||||||||||||||||| | || ||||| | || ||| | ||| |||||||| |||||| |||| | |||||||| |||||||| | |
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| T |
25274399 |
tcaactgcaggtccataagcccaactgcaaattatataatagagtatattaaaggcactaattccagctataagccaagagtacttgtcaaaatgaccct |
25274300 |
T |
|
| Q |
342 |
tgtt |
345 |
Q |
| |
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|||| |
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|
| T |
25274299 |
tgtt |
25274296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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