View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_83 (Length: 363)
Name: NF19530_low_83
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 22302112 - 22301843
Alignment:
| Q |
9 |
gaaatgaatgcttgtacattgtttcatgttttacaaagtgtatgatttgattagaaaactcattatcggaaaataatttataaaatgaggcattgattca |
108 |
Q |
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| T |
22302112 |
gaaatgaatgcttgtacattgtttcatgttttacaaagtgtatgatttgattagaaaactcattataggaaagtaatttataaaatgaggcattgattca |
22302013 |
T |
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| Q |
109 |
gatccttatttttggaaaatgttttcaaaatataatatatatactctaattttagaataaagacgatcgtcaatattttagtccaaaatctttgattgtt |
208 |
Q |
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| T |
22302012 |
gatccttatttttggaaaatgctttcaaaacataatatatatactctaattttagaataaagacgatcgtcaatattttaattcaaaatctttggttgtt |
22301913 |
T |
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| Q |
209 |
tgaaagaag---nnnnnnnncactttcaccgctgaaaatcgacaaatccaatcaatatagattggctagt |
275 |
Q |
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| T |
22301912 |
taaaagaagaaaaaaaaatacactttcaccgttgaaaatcgacaaatccaatcaatatagattgactagt |
22301843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 30470249 - 30470281
Alignment:
| Q |
35 |
tgttttacaaagtgtatgatttgattagaaaac |
67 |
Q |
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| T |
30470249 |
tgttttacaaagtgtatgatttgatttgaaaac |
30470281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 18513252 - 18513173
Alignment:
| Q |
23 |
tacattgtttcatgttttacaaagtgtatgatttgattagaaaactcattatcggaaaataatttataaaatgaggcatt |
102 |
Q |
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| T |
18513252 |
tacatcgtttcatgttttacaaagaaaatgatttgatttgaaaaatcagtgttggaaaatgacttataaaatgtggcatt |
18513173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 12738486 - 12738440
Alignment:
| Q |
248 |
caaatccaatcaatatagattggctagttgggctaactccaacataa |
294 |
Q |
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| T |
12738486 |
caaacccaatcaatatagattggctattagggcttactccaacataa |
12738440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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