View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_84 (Length: 362)
Name: NF19530_low_84
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 43598353 - 43598516
Alignment:
| Q |
7 |
tagattattcttcacatataacaactcatcattatccaacacatcatcactcaccacc---aaaaatcatccaaaaaagtaccaaaaactcnnnnnnnnn |
103 |
Q |
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| T |
43598353 |
tagattcttcttcacatacaacacatcatcattatccaacacatcatcactcaccaccaaaaaaaatcatccaaagaggtcccaaaaactc-tctttttg |
43598451 |
T |
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| Q |
104 |
caaaattccaaactaccctttcttacccaccactt-acctaatttttacactcttggtgatcaag |
167 |
Q |
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| T |
43598452 |
caaaatttcaaactaccctttcttatccaccacttaacctaatttttgcactcttggtgaccaag |
43598516 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 43135247 - 43135346
Alignment:
| Q |
139 |
acctaatttttacactcttggtgatcaagtcactccctc---gtacccaacaactcatagagagagggggccgaaattttgtgtagagaaaatcaccatt |
235 |
Q |
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| T |
43135247 |
acctaatttttgcactcttggtgaccaagtcactccttctaagtacccaacaactcatagagagagggggccgaaattttgagtggccaaaatcaccatt |
43135346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 13079702 - 13079630
Alignment:
| Q |
105 |
aaaattccaaactaccctttcttacccaccac-ttacctaatttttacactcttggtgatcaagtcactccctc |
177 |
Q |
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|||||| |||||||||||||||||| | |||| | ||||||||||| |||||||||||| ||||| ||| |||| |
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| T |
13079702 |
aaaatttcaaactaccctttcttactccccacgtaacctaattttt-cactcttggtgaccaagttacttcctc |
13079630 |
T |
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