View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_85 (Length: 361)
Name: NF19530_low_85
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 12808427 - 12808604
Alignment:
| Q |
15 |
ggaccaactaaattttcataaattcagctattgnnnnnnnntatgatgattaatcttacccttttgcgaagctcttccatttgttcaaccataatttgtg |
114 |
Q |
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| T |
12808427 |
ggaccaaacaaattttcataaattcagctattgaaaaaaa--atgatgattaatcttacccttttgcgaagctcttccatttgttcaatcataatttgtg |
12808524 |
T |
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| Q |
115 |
tctgcaattgaaataaaaattcagctatgatcatccgtaatcaatgttttatatacattcacaaccaatattgttctaaattg |
197 |
Q |
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| T |
12808525 |
tctgcaattgaaataaaaattcagctatgatcatcccaaatcaaggttttatatacattcacaacc---attgttctaaattg |
12808604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 12808605 - 12808727
Alignment:
| Q |
227 |
tattttaataaagttaattaaacttctgg-----caagacctaatttaatttttaatagttatatcatcactaggaaaattttacaaccaaaggaaaagt |
321 |
Q |
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| T |
12808605 |
tattttaataaagttaattaaacttctagagaagcaagaccttatttaattttcaatagttatatcataactaggaaaattttacaaccaaaggaaaaat |
12808704 |
T |
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| Q |
322 |
atcaatgaacaaaaatagataaa |
344 |
Q |
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| T |
12808705 |
ctcaattaacaaaaatagataaa |
12808727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 28475301 - 28475263
Alignment:
| Q |
83 |
aagctcttccatttgttcaaccataatttgtgtctgcaa |
121 |
Q |
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| T |
28475301 |
aagctcttccatttgttcaaccataatctgtgtctgcaa |
28475263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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