View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_87 (Length: 354)
Name: NF19530_low_87
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 41461401 - 41461090
Alignment:
| Q |
1 |
gtgatgacgtacatttaccaaaacctaatggtaagacatgtccaatatgcttgtcagaatatatgcctaaagagacggtgaaaactatgccagaatgtga |
100 |
Q |
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| T |
41461401 |
gtgatgacatacatttaccaaaacctaatggtaagacatgtccaatatgcttgtcagaatatatgcctaaagagacggtgaaaactatgccagaatgtga |
41461302 |
T |
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| Q |
101 |
acattgctttcatgcacaatgcattgatgaatggcttccactgaatgcgtcgtgcccaatttgtagaacttctcctccaaggttacaatcacaagcgaga |
200 |
Q |
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| T |
41461301 |
acattgctttcatgcacaatgcattgatgaatggcttccactgaatgcgtcgtgcccaatttgtagaacttctcctccaaggttacaatcacaagcgaga |
41461202 |
T |
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| Q |
201 |
ggtggtagtgactag-------tgaccgcaatacttaatttacacatgaaccaattgttgagttaacttatactgtaatttggatttgaaatcaccaaat |
293 |
Q |
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| T |
41461201 |
ggtggtagtgactagtgactagtgaccgcaatacttaatttacacatgaaccaattgttgagttaacttatactgtaatttggatttgaaatcaccaaat |
41461102 |
T |
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| Q |
294 |
tagtgtaaattt |
305 |
Q |
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|||||||||||| |
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| T |
41461101 |
tagtgtaaattt |
41461090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 41461076 - 41461042
Alignment:
| Q |
302 |
atttacttgtgcattcacgtaggtcatgttggttg |
336 |
Q |
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| T |
41461076 |
atttacttgtgcattcacgtaggtcatgttggttg |
41461042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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