View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_88 (Length: 353)

Name: NF19530_low_88
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_88
NF19530_low_88
[»] chr2 (17 HSPs)
chr2 (3-335)||(28214039-28214371)
chr2 (3-335)||(28221913-28222245)
chr2 (3-331)||(32310469-32310797)
chr2 (3-331)||(32813686-32814014)
chr2 (3-331)||(32786475-32786806)
chr2 (3-331)||(32564023-32564351)
chr2 (3-327)||(32306340-32306667)
chr2 (3-157)||(32792858-32793012)
chr2 (3-115)||(32799526-32799638)
chr2 (3-172)||(28158816-28158985)
chr2 (3-276)||(28177370-28177654)
chr2 (199-314)||(32317453-32317567)
chr2 (3-68)||(28161723-28161788)
chr2 (3-68)||(28171760-28171825)
chr2 (199-276)||(28158711-28158788)
chr2 (199-276)||(28169280-28169357)
chr2 (225-276)||(28183155-28183206)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 335
Target Start/End: Original strand, 28214039 - 28214371
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28214039 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 28214138  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
28214139 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaatctctgatagtagtgag 28214238  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28214239 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 28214338  T
303 aaacgtcgaaaacattccgttgctgctgacatt 335  Q
    |||||||||||||||||||||||||||||||||    
28214339 aaacgtcgaaaacattccgttgctgctgacatt 28214371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 28222245 - 28221913
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
28222245 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 28222146  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    ||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28222145 gcataagcaaaaaccaatatggcagtcttctcttaagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 28222046  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28222045 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 28221946  T
303 aaacgtcgaaaacattccgttgctgctgacatt 335  Q
    ||||||||||||||||||||||||| |||||||    
28221945 aaacgtcgaaaacattccgttgctgatgacatt 28221913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 32310797 - 32310469
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32310797 cagacgaacctgaccttgatttccagtcaaaacatcgaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32310698  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32310697 gcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 32310598  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 302  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
32310597 tgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgt 32310498  T
303 aaacgtcgaaaacattccgttgctgctga 331  Q
    ||||| ||||||| | |||||||||||||    
32310497 aaacgacgaaaacgtgccgttgctgctga 32310469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 32813686 - 32814014
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32813686 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32813785  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    ||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32813786 gcataagcaaaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 32813885  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 302  Q
    |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||    
32813886 tgtcaaaagatgctccagatggtactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagagttgaacattcattggctttgaagctgt 32813985  T
303 aaacgtcgaaaacattccgttgctgctga 331  Q
    ||||||||||||| | |||||||||||||    
32813986 aaacgtcgaaaacgtgccgttgctgctga 32814014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 32786475 - 32786806
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32786475 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32786574  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32786575 gcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 32786674  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt---tattagagtgatgaacattcattggctttgaaac 299  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||   || ||||||||||||||||||||  ||||||||     
32786675 tgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatgaacattcattttctttgaaat 32786774  T
300 tgtaaacgtcgaaaacattccgttgctgctga 331  Q
    |||||||||||||||| | |||||||||||||    
32786775 tgtaaacgtcgaaaacgtgccgttgctgctga 32786806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 32564023 - 32564351
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
32564023 cagacgaacctgaccttgatttcaagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggtagatccgtcatctgaa 32564122  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32564123 gcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 32564222  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgt 302  Q
    |||||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
32564223 tgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgt 32564322  T
303 aaacgtcgaaaacattccgttgctgctga 331  Q
    ||||| ||||||| | |||||||||||||    
32564323 aaacgacgaaaacgtgccgttgctgctga 32564351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 32306667 - 32306340
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32306667 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32306568  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgag 202  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
32306567 gcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgag 32306468  T
203 tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt---tattagagtgatgaacattcattggctttgaaac 299  Q
    |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||   || ||||||||||| |||| | ||||||||||||    
32306467 tgtcaaaatatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatgagcatttactggctttgaaac 32306368  T
300 tgtaaacgtcgaaaacattccgttgctg 327  Q
    |||||||||||||||| | |||||||||    
32306367 tgtaaacgtcgaaaacgtgccgttgctg 32306340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 32792858 - 32793012
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32792858 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32792957  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcag 157  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
32792958 gcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag 32793012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 32799526 - 32799638
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32799526 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 32799625  T
103 gcataagcagaaa 115  Q
    |||||||||||||    
32799626 gcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 28158985 - 28158816
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaa 102  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||  |||||||| ||||||||||||||||||||||||||||| |||    
28158985 cagacgaacctgacctttatttccagtcaaaacatcaatattagacaatttcaacaccacccttgccaaatccatccgaaaggttgatccgtcatcggaa 28158886  T
103 gcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctc 172  Q
    |||| |||||||| |||| | || || |||||| ||||||| |||||||||| ||| |||| || |||||    
28158885 gcattagcagaaatcaatctagcagtgttctctccagccatgagctgttgattagcgaacagtagccctc 28158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 28177654 - 28177370
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaattt------catcataacccttgcgaaatccatccgaaaggttgatccgtca 96  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||      || ||  |||||||| |||||||||||||||||||||||||||    
28177654 cagacgaacctgaccttgatttccagtcaaaacatcaagattagacaatttgaactccaacaccacccttgcaaaatccatccgaaaggttgatccgtca 28177555  T
97 tctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaata-----accctcttcctctcaacaaactctg 191  Q
    || ||||||| |||||||| |||  | ||  |  ||||| |||||||||||||||||| ||| |||| ||      |||||||||||| || |||||| |    
28177554 tcggaagcattagcagaaatcaacctagcactgctctctccagccatcagctgttgattagcgaacagtagccctcccctcttcctcttaataaactcgg 28177455  T
192 atagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 276  Q
    |||  |   ||||||||| ||||||  ||||||||||||||||||||| |||||| ||  ||||||| ||||  | |||||||||    
28177454 atatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgacatcacttttatgttagagtga 28177370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 32317567 - 32317453
Alignment:
199 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaa 298  Q
    |||||||||||||||| |  ||||| ||||||| ||||||| ||||||  |||||| |||||||| |||||||||||||| ||||| |||||||||||||    
32317567 tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatggacattaattggctttgaaa 32317469  T
299 ctgtaaacgtcgaaaa 314  Q
    || ||| |||||||||    
32317468 ctataaccgtcgaaaa 32317453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 28161788 - 28161723
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgc 68  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||| || || ||||||    
28161788 cagacaaacctgaccttgatttccagtcaaaacatcaatattagacaatttcaacacaatccttgc 28161723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 28171825 - 28171760
Alignment:
3 cagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgc 68  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||| ||  ||||||||    
28171825 cagatgaacctgaccttgatttccagtcaaaacatcaacattagacaatttcaacaccacccttgc 28171760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28158788 - 28158711
Alignment:
199 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 276  Q
    ||||||||||| |||||| |||||||||||||||| |||||  ||||| || |||||||| ||||  | |||||||||    
28158788 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtga 28158711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28169357 - 28169280
Alignment:
199 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 276  Q
    ||||||||||| |||||| |||||||||||||||| |||||  ||||| || |||||||| ||||  | |||||||||    
28169357 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtga 28169280  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 28183206 - 28183155
Alignment:
225 cactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 276  Q
    ||||||||||||||| |||| | |||||||||||||||| || |||||||||    
28183206 cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtga 28183155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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