View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_91 (Length: 344)
Name: NF19530_low_91
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 51939666 - 51939347
Alignment:
| Q |
19 |
ctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgctatattgactttgtatgtagggtacttcttcttctcaacagtgca |
118 |
Q |
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| T |
51939666 |
ctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgctatattgactttgtatgtagggtacttcttct---caacagtgca |
51939570 |
T |
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| Q |
119 |
accatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtggatatctgctatttcaaataagagagtaaaaaatatta |
218 |
Q |
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| T |
51939569 |
accatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtggatatctgctatttcaaataagagagtaaaaaatatta |
51939470 |
T |
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| Q |
219 |
gtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaatgtcagtccttggaggaattggtgctagaaatgatg------tg |
312 |
Q |
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| T |
51939469 |
gtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaatgtcagtccttggaggaattggtgctagaaatgatgtgtcaatg |
51939370 |
T |
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| Q |
313 |
taatatcgaagttcccacctttg |
335 |
Q |
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| T |
51939369 |
taatatcgaagttcccacttttg |
51939347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 51944602 - 51944464
Alignment:
| Q |
81 |
actttgtatgtagggtacttcttcttctcaacagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtg |
180 |
Q |
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| T |
51944602 |
actttgtatatagggtactgcttaatctcaacactgcaaccatccaaacattttctctggatattctacataattttgatccctaccatatcaatcaatg |
51944503 |
T |
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| Q |
181 |
gatatctgctatttcaaataagagagtaaaaaatattag |
219 |
Q |
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| T |
51944502 |
gatatctgttgtttcaaataagagagtaaaaattattag |
51944464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 51944431 - 51944394
Alignment:
| Q |
258 |
cttatccccttttcaaatgtcagtccttggaggaattg |
295 |
Q |
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| T |
51944431 |
cttatccgcttttcaaatgccagtccttggaggaattg |
51944394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 37420135 - 37420094
Alignment:
| Q |
259 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
300 |
Q |
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| T |
37420135 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
37420094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 34751811 - 34751775
Alignment:
| Q |
264 |
cccttttcaaatgtcagtccttggaggaattggtgct |
300 |
Q |
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| T |
34751811 |
cccttttcaaatgccagtccttagaggaattggtgct |
34751775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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