View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_92 (Length: 343)
Name: NF19530_low_92
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 10094443 - 10094757
Alignment:
| Q |
10 |
ggaggacaagccaggtgtaacatcggctccctttaacgagtataacttggcattcccatacgacgcgtcagccaactccggagatataatcaatgacatg |
109 |
Q |
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| T |
10094443 |
ggaggacaagccaggtgtaacatcggctccctttaacgagtataacttggcattcccatacgacgcgtcagccaactccggagatataatcaatgacatg |
10094542 |
T |
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| Q |
110 |
gtttgcgttcaattcaagcagctcacataaaatttcagtctgtacacnnnnnnnnnnnnnnngatcagtcatgaaaacgctataaattctgcaatccatt |
209 |
Q |
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| T |
10094543 |
gtttgcgttcaattcaaccagctcacataaaatttcagtctgtacacaaaaaagaaaaaaaagatcagtcatgaaaacgctataaattctgcaatccatt |
10094642 |
T |
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| Q |
210 |
aaacaagnnnnnnnnnnncttcttttctacataccttatagaaatagtataatagatcaagttgctcactgatgaaaatttagccgaatcttcaacgacg |
309 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10094643 |
aaccaag---ttttttttcttcttttctacataccttatagaaatagtataatagatcaagttgctcactgatgaaaatttagccgaatcttcaacgacg |
10094739 |
T |
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| Q |
310 |
cctttgctgagataggat |
327 |
Q |
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|||||||||||||||||| |
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| T |
10094740 |
cctttgctgagataggat |
10094757 |
T |
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