View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_97 (Length: 327)

Name: NF19530_low_97
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_97
NF19530_low_97
[»] chr3 (27 HSPs)
chr3 (9-327)||(24684912-24685231)
chr3 (217-323)||(30956719-30956825)
chr3 (217-323)||(30972531-30972637)
chr3 (212-323)||(35959549-35959660)
chr3 (218-323)||(2719341-2719446)
chr3 (9-81)||(24653433-24653506)
chr3 (218-321)||(1508675-1508779)
chr3 (209-320)||(3845658-3845769)
chr3 (212-319)||(20880343-20880450)
chr3 (103-209)||(24653276-24653382)
chr3 (233-323)||(46778320-46778410)
chr3 (215-297)||(31365391-31365473)
chr3 (283-323)||(21335612-21335652)
chr3 (9-76)||(24682419-24682487)
chr3 (215-315)||(53789562-53789662)
chr3 (219-318)||(19983653-19983752)
chr3 (9-79)||(24631760-24631831)
chr3 (278-320)||(10704669-10704711)
chr3 (212-322)||(20170389-20170499)
chr3 (236-322)||(29520573-29520658)
chr3 (283-312)||(42545498-42545527)
chr3 (210-255)||(42747912-42747957)
chr3 (283-323)||(583983-584023)
chr3 (215-255)||(849551-849591)
chr3 (215-255)||(3846042-3846082)
chr3 (234-326)||(12862337-12862429)
chr3 (269-321)||(18405927-18405979)
[»] scaffold0018 (1 HSPs)
scaffold0018 (211-323)||(157972-158084)
[»] chr7 (20 HSPs)
chr7 (212-323)||(33128623-33128734)
chr7 (209-320)||(9210491-9210602)
chr7 (211-319)||(46078012-46078120)
chr7 (219-323)||(4970881-4970985)
chr7 (216-316)||(21568728-21568828)
chr7 (212-323)||(45263959-45264072)
chr7 (215-301)||(46280374-46280460)
chr7 (215-276)||(33672957-33673018)
chr7 (215-276)||(39393705-39393766)
chr7 (208-296)||(3308372-3308460)
chr7 (212-276)||(38500058-38500122)
chr7 (211-270)||(27863843-27863902)
chr7 (283-322)||(45806420-45806459)
chr7 (267-322)||(48140137-48140192)
chr7 (217-271)||(18865195-18865249)
chr7 (236-322)||(45806571-45806657)
chr7 (233-322)||(23989578-23989667)
chr7 (210-251)||(30571088-30571129)
chr7 (283-319)||(31247666-31247702)
chr7 (210-270)||(40252242-40252302)
[»] chr2 (20 HSPs)
chr2 (218-327)||(12795664-12795773)
chr2 (233-322)||(32592474-32592563)
chr2 (215-323)||(41407170-41407278)
chr2 (211-323)||(42659244-42659356)
chr2 (213-321)||(23974585-23974693)
chr2 (243-323)||(42868554-42868634)
chr2 (216-323)||(12464566-12464673)
chr2 (215-301)||(11863800-11863886)
chr2 (206-271)||(1633691-1633756)
chr2 (215-276)||(39659648-39659709)
chr2 (243-320)||(41241228-41241305)
chr2 (213-273)||(15757809-15757869)
chr2 (243-323)||(22971611-22971690)
chr2 (235-323)||(33319906-33319994)
chr2 (217-276)||(43570297-43570356)
chr2 (291-320)||(2195906-2195935)
chr2 (209-254)||(41812236-41812281)
chr2 (291-323)||(4026762-4026794)
chr2 (243-322)||(26201925-26202005)
chr2 (219-287)||(27695716-27695784)
[»] chr1 (31 HSPs)
chr1 (211-319)||(37473264-37473372)
chr1 (213-311)||(41505554-41505652)
chr1 (210-323)||(41195287-41195400)
chr1 (215-323)||(14331658-14331766)
chr1 (283-323)||(47432033-47432073)
chr1 (239-301)||(24552455-24552517)
chr1 (217-323)||(51688576-51688682)
chr1 (215-276)||(5894293-5894354)
chr1 (205-254)||(34795566-34795615)
chr1 (261-313)||(2295019-2295071)
chr1 (283-323)||(30582041-30582081)
chr1 (264-320)||(37631655-37631711)
chr1 (211-319)||(44932029-44932137)
chr1 (216-276)||(47498973-47499033)
chr1 (212-307)||(33541817-33541912)
chr1 (212-306)||(5741528-5741622)
chr1 (212-254)||(17603533-17603575)
chr1 (267-320)||(7861999-7862052)
chr1 (211-323)||(14576746-14576858)
chr1 (291-326)||(29904704-29904739)
chr1 (217-272)||(30581683-30581738)
chr1 (278-321)||(34795520-34795563)
chr1 (211-302)||(38247319-38247409)
chr1 (216-253)||(24562466-24562503)
chr1 (218-323)||(30191863-30191968)
chr1 (212-277)||(33546589-33546654)
chr1 (209-254)||(37617564-37617609)
chr1 (221-306)||(42391241-42391326)
chr1 (209-254)||(49938611-49938656)
chr1 (283-323)||(7107605-7107645)
chr1 (287-323)||(17830095-17830131)
[»] chr8 (15 HSPs)
chr8 (209-323)||(1058167-1058281)
chr8 (211-322)||(14956389-14956500)
chr8 (212-323)||(35534704-35534813)
chr8 (216-323)||(12976086-12976190)
chr8 (211-323)||(36963438-36963550)
chr8 (220-317)||(9130409-9130506)
chr8 (218-323)||(29168145-29168250)
chr8 (238-322)||(38353242-38353325)
chr8 (283-322)||(32975997-32976036)
chr8 (215-254)||(40980999-40981038)
chr8 (12-74)||(41799978-41800041)
chr8 (261-307)||(38750273-38750319)
chr8 (261-306)||(27028754-27028799)
chr8 (283-323)||(12497324-12497364)
chr8 (207-251)||(29819045-29819089)
[»] chr4 (19 HSPs)
chr4 (209-306)||(18814955-18815051)
chr4 (212-322)||(43505824-43505932)
chr4 (211-322)||(50681183-50681294)
chr4 (240-323)||(41336655-41336737)
chr4 (203-253)||(39603594-39603644)
chr4 (233-322)||(15173394-15173483)
chr4 (211-323)||(17204003-17204115)
chr4 (209-305)||(24169124-24169220)
chr4 (283-323)||(25904303-25904343)
chr4 (210-323)||(26984-27089)
chr4 (276-323)||(9760370-9760417)
chr4 (233-323)||(31851343-31851431)
chr4 (213-255)||(2243944-2243986)
chr4 (261-323)||(22030119-22030180)
chr4 (210-323)||(29912813-29912926)
chr4 (209-254)||(38337056-38337101)
chr4 (291-323)||(8422930-8422962)
chr4 (207-323)||(19494775-19494891)
chr4 (291-323)||(21193943-21193975)
[»] chr5 (25 HSPs)
chr5 (212-323)||(3735584-3735695)
chr5 (218-323)||(7319104-7319209)
chr5 (217-323)||(12554334-12554440)
chr5 (209-314)||(7706078-7706186)
chr5 (220-272)||(19460520-19460572)
chr5 (211-318)||(25461853-25461960)
chr5 (155-209)||(278823-278877)
chr5 (269-323)||(2973612-2973665)
chr5 (216-322)||(13697853-13697959)
chr5 (217-323)||(24030495-24030601)
chr5 (261-322)||(32009905-32009967)
chr5 (287-323)||(9107053-9107089)
chr5 (211-323)||(32372489-32372601)
chr5 (283-323)||(35445992-35446032)
chr5 (30-80)||(278671-278722)
chr5 (283-322)||(16458072-16458111)
chr5 (289-323)||(39594751-39594785)
chr5 (209-268)||(3569097-3569153)
chr5 (287-320)||(3932781-3932814)
chr5 (215-276)||(9202878-9202939)
chr5 (233-322)||(35299624-35299713)
chr5 (210-318)||(25460956-25461064)
chr5 (291-323)||(28776920-28776952)
chr5 (285-321)||(29925780-29925816)
chr5 (283-323)||(42500318-42500358)
[»] chr6 (13 HSPs)
chr6 (215-319)||(24626164-24626268)
chr6 (212-317)||(6538383-6538488)
chr6 (235-323)||(35070723-35070812)
chr6 (261-323)||(8147618-8147679)
chr6 (233-322)||(18076083-18076172)
chr6 (211-299)||(34430581-34430669)
chr6 (273-320)||(31623487-31623534)
chr6 (239-318)||(30926431-30926510)
chr6 (289-323)||(4163118-4163152)
chr6 (289-323)||(4224739-4224773)
chr6 (215-276)||(264250-264311)
chr6 (215-271)||(658580-658636)
chr6 (217-277)||(2455145-2455205)
[»] scaffold0024 (1 HSPs)
scaffold0024 (291-323)||(21371-21403)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 24685231 - 24684912
Alignment:
Q  9 gaagaatatgagatgtggttttataagcacagaa-agaatacaagtcctggttctcaagatcagaccttaagcagttctacagttatgtggaggtgcatc 107  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24685231 gaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttctcaagatcagaccttaagcagttctacagttatgtggaggtgcatc 24685132  T
Q  108 ttcaagtttgagtcagaacaattctacagctctgaagttaagcggccaatcaatatctagtagaggtcctgctactgatccagatagtctctattcaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24685131 ttcaagtttgagtcagaacaattctacagctctgaagttaagcggccaatcaatatctagtagaggtcctgctactgatccagatagtctctattcaaga 24685032  T
Q  208 gttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatag 307  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  24685031 gttagggcctgtttggatagacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcataagtttacataagctatttttatag 24684932  T
Q  308 aaaaagataaaataaatttt 327  Q
    ||||||||||||||||||||    
T  24684931 aaaaagataaaataaatttt 24684912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 30956825 - 30956719
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagata 316  Q
    ||||||||||||| | ||||||||||||||||||||||   || ||||||||||||  || |||| ||||||||||||||||||| ||||| ||||||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagata 30956726  T
Q  317 aaataaa 323  Q
    |||||||    
T  30956725 aaataaa 30956719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 30972637 - 30972531
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagata 316  Q
    ||||||||||||| | ||||||||||||||||||||||   || ||||||||||||  || |||| ||||||||||||||||||| ||||| ||||||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagata 30972538  T
Q  317 aaataaa 323  Q
    |||||||    
T  30972537 aaataaa 30972531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 35959660 - 35959549
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    |||| ||||||||||||| | |||||||||||||||| |||||  ||| ||||||||||| |||| || | ||||| ||||||||||||| |||||||||    
T  35959660 gggcttgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtataagctcacataagctatttctatagaaaa 35959561  T
Q  312 agataaaataaa 323  Q
     |||||||||||    
T  35959560 ggataaaataaa 35959549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 323
Target Start/End: Original strand, 2719341 - 2719446
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    ||||| |||||| | |||||| ||||||||||||||||  || |||||||||||| |||  ||| ||||||||| ||||||||| || || |||| ||||    
T  2719341 gtttgaataaacagcttatttacagcttatagcacaaacgcttatcatgataagcacttacgcataagcttacacaagctatttctaaagcaaaatataa 2719440  T
Q  318 aataaa 323  Q
    ||||||    
T  2719441 aataaa 2719446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 24653506 - 24653433
Alignment:
Q  9 gaagaatatgagatgtggttttataagcaca-gaaagaatacaagtcctggttctcaagatcagaccttaagca 81  Q
    |||||| ||||||||||||| | |||||||  || |||||||||||||||||||||| ||||||||||||||||    
T  24653506 gaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatcagaccttaagca 24653433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 1508779 - 1508675
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagcta-tttttatagaaaaagata 316  Q
    ||||||| |||| | ||||||||| |||||||||||| | || |||||||||||||||| || | |||||| ||||| ||| |||||| || ||||||||    
T  1508779 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 1508680  T
Q  317 aaata 321  Q
    |||||    
T  1508679 aaata 1508675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 3845769 - 3845658
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttataga 308  Q
    ||||| |||||||||||||||   |||||||||| | |||||||||   || ||  | ||||| ||||||| | ||||||||||||||||||| ||||||    
T  3845769 ttaggccctgtttggataaacaacttatttgcagttcatagcacaagcacttattgtaataagtgcttttgtataagcttacataagctatttctataga 3845670  T
Q  309 aaaagataaaat 320  Q
     |||||||||||    
T  3845669 gaaagataaaat 3845658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 20880343 - 20880450
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    ||||||||||||||| ||   |||||||||| |||||||||||    | ||||| ||||| |||| || | ||||||||||||||||||||||||| |||    
T  20880343 gggcctgtttggatagacaacttatttgcagtttatagcacaagcggttatcataataagtgcttatgtataagcttacataagctatttttatagcaaa 20880442  T
Q  312 agataaaa 319  Q
     |||||||    
T  20880443 tgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 24653382 - 24653276
Alignment:
Q  103 gcatcttcaagtttgagtcagaacaattctacagctctgaagttaagcggccaatcaatatctagtagaggtcctgctactgatccagatagtctctatt 202  Q
    |||| |||||||||||| ||||| | |||||||||| |||| ||||| ||| |||||| ||||||||| |||||  || |||||||| | || ||||||     
T  24653382 gcattttcaagtttgagccagaaaatttctacagctatgaacttaagtggcaaatcaagatctagtagtggtccctctgctgatccacagagcctctata 24653283  T
Q  203 caagagt 209  Q
    |||||||    
T  24653282 caagagt 24653276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 46778410 - 46778320
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||| ||||||| |||||  || |||||||||||||||| || |  |||||| ||||||||||| ||||| || ||||||||||||    
T  46778410 ttatttgcaccttatagtacaaacacttatcatgataagcgcttatgtatcagcttatataagctatttctatagcaagagataaaataaa 46778320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 31365473 - 31365391
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagct 297  Q
    ||||| ||||||||| | |||||||||||||||||||||| |  | |||||||||||| ||| || | |||||| ||||||||    
T  31365473 cctgtgtggataaacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtataagcttgcataagct 31365391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 21335612 - 21335652
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  21335612 aagcttaaataagctaattttatagaaaaagataaaataaa 21335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 24682487 - 24682419
Alignment:
Q  9 gaagaatatgagatgtggttttataagcacagaa-agaatacaagtcctggttctcaagatcagacctt 76  Q
    |||||| ||||||||||||| | |||||||  || ||||||||||| |||||||||| |||||||||||    
T  24682487 gaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggttctcaggatcagacctt 24682419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 53789662 - 53789562
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaaga 314  Q
    ||||||||| ||||||  ||| |||||||||||  |||||   || |||||||||||| ||| ||   ||||||||||||||||||| ||||| ||||||    
T  53789662 cctgtttgggtaaacgacttaattgcagcttatgccacaagcgcttatcatgataagcacttatgtgtaagcttacataagctatttctataggaaaaga 53789563  T
Q  315 t 315  Q
    |    
T  53789562 t 53789562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 19983653 - 19983752
Alignment:
Q  219 tttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaa 318  Q
    |||||||||||   |||||||||  |||||||| || |  | || |||||||||| || || | ||||||||||||| ||||| ||||||||||||||||    
T  19983653 tttggataaacaacttatttgcaatttatagcataattgtttattatgataagcgtttatgtataagcttacataagttatttctatagaaaaagataaa 19983752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 24631831 - 24631760
Alignment:
Q  9 gaagaatatgagatgtggttttataagcacagaa-agaatacaagtcctggttctcaagatcagaccttaag 79  Q
    |||||||||||||| ||||| ||||| |||| || | ||||||||||||||||| |  ||||||||||||||    
T  24631831 gaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaag 24631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 10704711 - 10704669
Alignment:
Q  278 tgcacaagcttacataagctatttttatagaaaaagataaaat 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||||    
T  10704711 tgcataagcttacataagctacttttatagcaaaagataaaat 10704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 20170389 - 20170499
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    ||||||||| ||| ||||   |||||||||| ||||| ||||| | ||  ||||||||||||||| || |  ||||| || ||||||||||||  | |||    
T  20170389 gggcctgttgggagaaacaacttatttgcagtttatatcacaactgcttttcatgataagcgcttatgtatcagcttgcacaagctatttttactgcaaa 20170488  T
Q  312 agataaaataa 322  Q
    |||||||||||    
T  20170489 agataaaataa 20170499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 29520658 - 29520573
Alignment:
Q  236 tttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||||||||||||| |||  || ||||| |||||| ||| || | |||||| ||||||||| |||||||| |||||| |||||||    
T  29520658 tttgcagcttatagcataaacacttatcataataagcacttatgtataagcttgcataagcta-ttttatagcaaaagagaaaataa 29520573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 42545527 - 42545498
Alignment:
Q  283 aagcttacataagctatttttatagaaaaa 312  Q
    ||||||||||||||||||||||||||||||    
T  42545527 aagcttacataagctatttttatagaaaaa 42545498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 42747957 - 42747912
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaa 255  Q
    |||| ||||||||||||||| | ||||||||| |||||||||||||    
T  42747957 taggccctgtttggataaacagcttatttgcaacttatagcacaaa 42747912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 583983 - 584023
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||| ||||| ||||||||| |||||||||||    
T  583983 aagcttacataagttatttctatagaaaatgataaaataaa 584023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 849551 - 849591
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaa 255  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  849551 cctgtttggataaacaacttatttgcagcttatagcacaaa 849591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 3846082 - 3846042
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaa 255  Q
    ||||||||||||||| | ||||||| |||||||||||||||    
T  3846082 cctgtttggataaacagcttatttgtagcttatagcacaaa 3846042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 12862429 - 12862337
Alignment:
Q  234 tatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaattt 326  Q
    ||||||||| |||||||| ||   || || ||||||||| ||| ||   |||||| ||||| |||||||||||| ||||||||||||| ||||    
T  12862429 tatttgcaggttatagcaaaagcgcttataatgataagcacttatgtttaagcttgcataatctatttttatagcaaaagataaaatagattt 12862337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 18405979 - 18405927
Alignment:
Q  269 aagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaata 321  Q
    |||||||| || | ||||||||||||| ||||| ||||| |||||||||||||    
T  18405979 aagcgcttatgtataagcttacataagttatttatataggaaaagataaaata 18405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 157972 - 158084
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||||||||||||||||| | |||||||||||||||||||||||  || || |||||||  |||| ||||  |||||||||||||||||||||||||||    
T  157972 agggcctgtttggataaacagcttatttgcagcttatagcacaaacacttatgatgataattgcttatgcattagcttacataagctatttttatagaaa 158071  T
Q  311 aagataaaataaa 323  Q
    || ||||| ||||    
T  158072 aacataaattaaa 158084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 33128623 - 33128734
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    |||||||||||||||||| | |||||||||||||| ||||||||  || ||||||||||| |||| |||| |||||||| || | ||||||||||||||     
T  33128623 gggcctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgcttatgcataagcttacttacgttatttttatagaaag 33128722  T
Q  312 agataaaataaa 323  Q
    ||||||||||||    
T  33128723 agataaaataaa 33128734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 9210491 - 9210602
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttataga 308  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||   | |||||||||| ||||| || | |||||| ||||||||| |||||||||    
T  9210491 ttagggcctgtttggataaacagcttatttgcagcttatagcgcaaacatttatcatgataatcgcttatgtataagcttgcataagctacttttataga 9210590  T
Q  309 aaaagataaaat 320  Q
    |||| |||||||    
T  9210591 aaaaaataaaat 9210602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 46078012 - 46078120
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||||||||||||| |||| | |||| |||| |||| ||||||||  |  |||||||||||||||| || | ||||||||||||| ||||||||||||||    
T  46078012 agggcctgtttggacaaacagcttatatgcaacttaaagcacaaacacatatcatgataagcgcttatgtataagcttacataagttatttttatagaaa 46078111  T
Q  311 aagataaaa 319  Q
    |||||||||    
T  46078112 aagataaaa 46078120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 4970985 - 4970881
Alignment:
Q  219 tttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaa 318  Q
    ||||||||||||| ||||||||||||||||| | || | |  | ||||||||||| || || | ||||||||||||||||||| ||||| ||||||||||    
T  4970985 tttggataaacggcttatttgcagcttatagaaaaagtccctaccatgataagcggttatgtataagcttacataagctatttctatagcaaaagataaa 4970886  T
Q  319 ataaa 323  Q
    |||||    
T  4970885 ataaa 4970881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 21568828 - 21568728
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagat 315  Q
    |||||||||||||| | || |||||||||||||||| || | || |||||||||||| ||| || | |||||| |||||||||||||||||| |||||||    
T  21568828 ctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagcttgcataagctatttttatagcaaaagat 21568729  T
Q  316 a 316  Q
    |    
T  21568728 a 21568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 45263959 - 45264072
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagcta--tttttatagaa 309  Q
    ||||||||||||||||||   |||||||| ||||||  |||||   || ||||||| ||||||||  ||| ||||||||||||||||  |||||||||||    
T  45263959 gggcctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatgaaaagcgcttacgcataagcttacataagctatttttttatagaa 45264058  T
Q  310 aaagataaaataaa 323  Q
    |||||| |||||||    
T  45264059 aaagatgaaataaa 45264072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 46280460 - 46280374
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctattt 301  Q
    ||||||||||||||| ||||||||  ||||||||||||||    | |||||||||||| ||  |||| |||||||||||| ||||||    
T  46280460 cctgtttggataaacagtttatttatagcttatagcacaagcgtttatcatgataagcactcatgcataagcttacataatctattt 46280374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 33672957 - 33673018
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    |||||||||||||||  ||||||||||||||||||||||| |  | || |||||||||||||    
T  33672957 cctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataagcgctt 33673018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 39393766 - 39393705
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    ||||||||||| ||| | ||||||||||||||||||||||  | | ||||||||||||||||    
T  39393766 cctgtttggatgaacagcttatttgcagcttatagcacaagctttgatcatgataagcgctt 39393705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 3308460 - 3308372
Alignment:
Q  208 gttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagc 296  Q
    ||||||| |||||| ||||||| | ||||||| |||||||||||||| | ||  |||||||||| |||| || | ||| ||||||||||    
T  3308460 gttagggtctgtttagataaacagcttatttggagcttatagcacaagtacttttcatgataagtgcttatgtataaggttacataagc 3308372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 38500122 - 38500058
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    |||||||||| ||||||| | |||||||||| |||||||||||   || ||||||||||||||||    
T  38500122 gggcctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgctt 38500058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 27863902 - 27863843
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataa 270  Q
    |||||||||||||||||||   ||||||| |||||||||||||| | || ||||||||||    
T  27863902 agggcctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 45806459 - 45806420
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  45806459 aagcttgcataagctatttttatagcaaaagataaaataa 45806420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 48140137 - 48140192
Alignment:
Q  267 ataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||||||| || | |||||| |||||||||||||||||  ||||||||||||||    
T  48140137 ataagcgcttatgtataagcttgcataagctatttttataacaaaagataaaataa 48140192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 18865249 - 18865195
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataag 271  Q
    |||||||||||||   |||||||||||||||||||||||  || |||||||||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataag 18865195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 45806657 - 45806571
Alignment:
Q  236 tttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||||||||||||| ||   || ||||| |||||| ||| || | |||||| |||||||||| ||||||| |||||| |||||||    
T  45806657 tttgcagcttatagcaaaagcacttatcataataagcacttatgtataagcttgcataagctatgtttatagcaaaagagaaaataa 45806571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 23989667 - 23989578
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    ||||||||||||||||| |||    || |||||||||||  ||| || | ||| || ||||| |||||||||||| ||||||||||||||    
T  23989667 ttatttgcagcttatagtacacgcgcttatcatgataagttcttatgtataagtttgcataaactatttttatagtaaaagataaaataa 23989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 30571129 - 30571088
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagca 251  Q
    |||||| ||||||||||||| | |||||||||||||||||||    
T  30571129 tagggcgtgtttggataaacagcttatttgcagcttatagca 30571088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 31247702 - 31247666
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaa 319  Q
    |||||| |||||||||||||||||| |||||||||||    
T  31247702 aagcttgcataagctatttttatagcaaaagataaaa 31247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 40252302 - 40252242
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataa 270  Q
    ||||||||||||||||||||   |||| ||||||||||||||||  |||| || |||||||    
T  40252302 tagggcctgtttggataaacaccttatatgcagcttatagcacatgttcttattatgataa 40252242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 327
Target Start/End: Original strand, 12795664 - 12795773
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    |||||||||||| |||||||||||| |||||||| || | || |||||||||||| ||||| || |||||||||||||||||||| |||||||| ||| |    
T  12795664 gtttggataaacagtttatttgcagtttatagcataagtgcttatcatgataagcactttttcataagcttacataagctattttgatagaaaaggatta 12795763  T
Q  318 aataaatttt 327  Q
    | ||||||||    
T  12795764 agtaaatttt 12795773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 32592474 - 32592563
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    ||||||| |||||||||||||||  || ||||| |||||||||| || | |||||| ||||| |||||||||||||||||||||||||||    
T  32592474 ttatttgtagcttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataa 32592563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 41407170 - 41407278
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaaga 314  Q
    ||||||||||||||| | || |||||||||||||||||||   || |||||||||||| ||| || | ||||||||||||||||||| | ||  ||||||    
T  41407170 cctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagcttacataagctatttctgtaccaaaaga 41407269  T
Q  315 taaaataaa 323  Q
    |||||||||    
T  41407270 taaaataaa 41407278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 42659356 - 42659244
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||||||||||||||||     |||||||||||| |||||||| |  || |||||||||||||||| || | ||||||||||||||||||||||| ||||    
T  42659356 agggcctgtttggataagaaacttatttgcagctaatagcacacacacttatcatgataagcgcttatgtataagcttacataagctatttttatggaaa 42659257  T
Q  311 aagataaaataaa 323  Q
    | | |||||||||    
T  42659256 atggtaaaataaa 42659244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 23974693 - 23974585
Alignment:
Q  213 ggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaa 312  Q
    ||||||||||||||| | | ||||||| |||||||| ||||| |  | | || ||||||| ||| |||| |||||||| |||||||||||||||||||||    
T  23974693 ggcctgtttggataagcagcttatttggagcttatatcacaagtgataagcaagataagcacttatgcataagcttacttaagctatttttatagaaaaa 23974594  T
Q  313 gataaaata 321  Q
    || ||||||    
T  23974593 gacaaaata 23974585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 42868634 - 42868554
Alignment:
Q  243 cttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||   || ||||||||| |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||    
T  42868634 cttatagcacaagcgcttatcatgataggcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaa 42868554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 12464673 - 12464566
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagat 315  Q
    |||||||||||||||| ||||||| |||||||| | ||    || ||||||||||| || | || | ||||||||||||||||||| | |||||||||||    
T  12464673 ctgtttggataaacggcttatttgtagcttataacgcacgcacttatcatgataagtgcatatgtagaagcttacataagctatttctgtagaaaaagat 12464574  T
Q  316 aaaataaa 323  Q
    ||||||||    
T  12464573 aaaataaa 12464566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 11863800 - 11863886
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctattt 301  Q
    ||||| |||||||||   |||||| ||||||| ||||||||  ||  ||||||||||||||| |||| |||||||||||||||||||    
T  11863800 cctgtctggataaacaacttattttcagcttacagcacaaacacttgtcatgataagcgcttatgcataagcttacataagctattt 11863886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 1633756 - 1633691
Alignment:
Q  206 gagttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataag 271  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||| || | || |||||||||||    
T  1633756 gagttggggcctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataag 1633691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 39659709 - 39659648
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    |||||||||||||||   |||||||||||||| ||||||||| || ||||||||||||||||    
T  39659709 cctgtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgctt 39659648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 41241305 - 41241228
Alignment:
Q  243 cttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaat 320  Q
    ||||||||||||   || ||||||||| |||||| || | ||||||||||||||||||| ||||| ||||||||||||    
T  41241305 cttatagcacaagcacttatcatgatatgcgcttatggataagcttacataagctatttctataggaaaagataaaat 41241228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 15757869 - 15757809
Alignment:
Q  213 ggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcg 273  Q
    ||||||||||||||||| | |||||| |||||||||||||||   || |||||||||||||    
T  15757869 ggcctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataagcg 15757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 22971690 - 22971611
Alignment:
Q  243 cttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||   | || ||||||||||||| || | ||||||| ||||||||||| ||||| |||||||||||||||    
T  22971690 cttatagcacaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaagataaaataaa 22971611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 33319994 - 33319906
Alignment:
Q  235 atttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||||||   || ||| |||||| ||||| || | ||| |||||||| |||||||||||| ||| ||||| |||||    
T  33319994 atttgcagcttatagcacaagcgcttatcctgataatcgcttatgtaaaagtttacataaactatttttatagtaaatgataacataaa 33319906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 43570297 - 43570356
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    ||||||| ||||| | ||||||||||||||||||||||   || ||||||||||||||||    
T  43570297 tgtttgggtaaacagcttatttgcagcttatagcacaagcacttatcatgataagcgctt 43570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Original strand, 2195906 - 2195935
Alignment:
Q  291 ataagctatttttatagaaaaagataaaat 320  Q
    ||||||||||||||||||||||||||||||    
T  2195906 ataagctatttttatagaaaaagataaaat 2195935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 41812281 - 41812236
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    |||||||||||||||||||||   |||||||||| |||||||||||    
T  41812281 ttagggcctgtttggataaacaacttatttgcagtttatagcacaa 41812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 4026762 - 4026794
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||| |||||||||||||||    
T  4026762 ataagctatttttatagcaaaagataaaataaa 4026794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 26201925 - 26202005
Alignment:
Q  243 cttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatag-aaaaagataaaataa 322  Q
    ||||||||||||   || |||||||||||| ||| |  | |||||| |||||||||||||||||| ||| |||||||||||    
T  26201925 cttatagcacaagcgcttatcatgataagcccttatatataagcttgcataagctatttttatagcaaagagataaaataa 26202005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 27695784 - 27695716
Alignment:
Q  219 tttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagct 287  Q
    |||||||||||   ||||||| |||||||||||||||  || ||||||||||||  || ||||||||||    
T  27695784 tttggataaacaacttatttgtagcttatagcacaaacacttatcatgataagcatttgtgcacaagct 27695716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 37473264 - 37473372
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||||||||||||||||||   ||||||||||||||| |||||| |||| ||||||| |||| ||| || | ||||||||||||||||||||||||| ||    
T  37473264 agggcctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagcttacataagctatttttatagcaa 37473363  T
Q  311 aagataaaa 319  Q
    | |||||||    
T  37473364 atgataaaa 37473372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 41505554 - 41505652
Alignment:
Q  213 ggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    ||||||||||||||||| | |||||||||||||||||||||||  || || |||||||| |||| ||||   |||||||||||||||||||||||||||    
T  41505554 ggcctgtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgataagtgcttatgcattggcttacataagctatttttatagaaaa 41505652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 41195400 - 41195287
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaa 309  Q
    |||||||||||||||||||    ||||||||||||||||||||||   || ||| |||||| ||||| || | ||| |||||||| |||||||||||| |    
T  41195400 tagggcctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataagtttacataaactatttttatagta 41195301  T
Q  310 aaagataaaataaa 323  Q
    || ||||| |||||    
T  41195300 aatgataacataaa 41195287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 14331658 - 14331766
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaaga 314  Q
    ||||||| ||||||| | ||||||| ||||||||||||||   ||  ||||||||||| ||| || | ||||| ||||||||||||| || |||| ||||    
T  14331658 cctgtttagataaacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagctaacataagctatttctacagaacaaga 14331757  T
Q  315 taaaataaa 323  Q
    |||||||||    
T  14331758 taaaataaa 14331766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 47432033 - 47432073
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47432033 aagcttacataagctatttttatagaaaaagataaaataaa 47432073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 24552517 - 24552455
Alignment:
Q  239 gcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctattt 301  Q
    |||||||||||||||| |  | |||||||||||||||| || |||||||||||||||||||||    
T  24552517 gcagcttatagcacaagtgattatcatgataagcgcttatgtacaagcttacataagctattt 24552455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 51688576 - 51688682
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagata 316  Q
    |||||||||||||   ||||||||||||||||| |||| | || ||||||||||| | || |  | |||||||||| |||||||| | ||| ||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataagcttacatgagctatttatgtaggaaaagata 51688675  T
Q  317 aaataaa 323  Q
    |||||||    
T  51688676 aaataaa 51688682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 5894354 - 5894293
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    ||||||||||||||| | ||||||| |||||||||||||| | || ||||||||||||||||    
T  5894354 cctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataagcgctt 5894293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 34795615 - 34795566
Alignment:
Q  205 agagttagggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  34795615 agagttagggcctgtttggataaacagcttatttgcatcttatagcacaa 34795566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 2295019 - 2295071
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaag 313  Q
    ||||||||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  2295019 atcatgataagtgcttatgcataagcttacataagctatttctatagaaaaag 2295071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 30582081 - 30582041
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  30582081 aagcttacataaggtatttttatagaaaaagataaaataaa 30582041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 37631711 - 37631655
Alignment:
Q  264 atgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaat 320  Q
    ||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||    
T  37631711 atgataagcgcttatacataagcttacataagctatctttatagagaaagataaaat 37631655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 44932137 - 44932029
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||||||||||||||||| |||| |||||||| |||| ||  ||  || |||||||||||| |||  | | |||||| ||||| |||| ||||||| ||    
T  44932137 agggcctgtttggataaacagtttgtttgcagcatataacattaacacttatcatgataagcacttaggtataagcttgcataaactatatttatagcaa 44932038  T
Q  311 aagataaaa 319  Q
    |||||||||    
T  44932037 aagataaaa 44932029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 47499033 - 47498973
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    ||||||||||||||   |||||||||||||||||||||| | || ||||||||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgctt 47498973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 33541912 - 33541817
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatag 307  Q
    ||||| ||||||||||||   |||||||||| ||||||||||| |  | |||||||||||||||| || | ||||||  ||||| |||||||||||    
T  33541912 gggccagtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttgaataagatatttttatag 33541817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 5741528 - 5741622
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttata 306  Q
    |||||||||||||||||    |||||||  |||||||||||||   |  |||||||||||||||| || | ||| ||||||||||||||||||||    
T  5741528 gggcctgtttggataaatatcttatttgtggcttatagcacaagcacctatcatgataagcgcttatgtataagtttacataagctatttttata 5741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 17603575 - 17603533
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  17603575 gggcctgtttggataaacggcttatttgtagcttatagcacaa 17603533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 7861999 - 7862052
Alignment:
Q  267 ataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaat 320  Q
    |||||| ||| |||| ||||||  ||||||||||||||||||||||||||||||    
T  7861999 ataagctcttatgcataagctttgataagctatttttatagaaaaagataaaat 7862052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 14576858 - 14576746
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||||||||| ||||||||   |||||| |||||||||||||||  ||| |||||||||||| ||| |  | ||||| |  ||||||||||  |||| ||    
T  14576858 agggcctgttgggataaacatcttatttccagcttatagcacaagctcttatcatgataagcacttatttataagctcatgtaagctatttccatagtaa 14576759  T
Q  311 aagataaaataaa 323  Q
    | |||||||||||    
T  14576758 aggataaaataaa 14576746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 29904704 - 29904739
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaattt 326  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29904704 ataagctatttttatagcaaaagataaaataaattt 29904739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 30581683 - 30581738
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagc 272  Q
    ||||||||||||| ||||||||||||||||||| |||| | ||  |||||||||||    
T  30581683 tgtttggataaacagtttatttgcagcttatagaacaagtacttttcatgataagc 30581738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 34795563 - 34795520
Alignment:
Q  278 tgcacaagcttacataagctatttttatagaaaaagataaaata 321  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||    
T  34795563 tgcataagcttagataagctatttttattgaaaaagataaaata 34795520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 38247319 - 38247409
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttt 302  Q
    ||||||||||||||||||| | | ||||||||||||||||||||   || ||||||||| || ||| || | ||||| ||||||||| ||||    
T  38247319 agggcctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagctcacataagctgtttt 38247409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 24562503 - 24562466
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcaca 253  Q
    |||||||||||||| | |||||||||||||||||||||    
T  24562503 ctgtttggataaacagcttatttgcagcttatagcaca 24562466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 323
Target Start/End: Original strand, 30191863 - 30191968
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    |||||||||||  | |||||| || ||||||||| || | || || ||||||||| ||| || | |||  ||| |||||||||||||||| |||| ||||    
T  30191863 gtttggataaatagcttatttacaacttatagcagaagtgcttattatgataagcacttgtgtataagtatacctaagctatttttatagcaaaaaataa 30191962  T
Q  318 aataaa 323  Q
    ||||||    
T  30191963 aataaa 30191968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 33546654 - 33546589
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttt 277  Q
    |||||||||||||||||| | ||||| |||||||| ||||||| |  | ||||||||| |||||||    
T  33546654 gggcctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgatatgcgcttt 33546589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 37617609 - 37617564
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    ||||||| |||||| ||||||  |||||||||||||||||||||||    
T  37617609 ttagggcatgtttgtataaacaatttatttgcagcttatagcacaa 37617564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 42391241 - 42391326
Alignment:
Q  221 tggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttata 306  Q
    |||||||||  ||||||||| ||||| ||||||||  || ||||||||||| |||| || | |||||| | ||| |||||||||||    
T  42391241 tggataaacaatttatttgcggcttacagcacaaaagcttatcatgataagtgcttatgtataagcttgcttaaactatttttata 42391326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 49938611 - 49938656
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    ||||||||||||||||||||  | |||| |||||||||||||||||    
T  49938611 ttagggcctgtttggataaaaagcttatctgcagcttatagcacaa 49938656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 7107645 - 7107605
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||||||| || || ||||||||||||    
T  7107645 aagcttacataagctatttttacagcaatagataaaataaa 7107605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 17830095 - 17830131
Alignment:
Q  287 ttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  17830095 ttacataagctatttttatagcaaatgataaaataaa 17830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 1058281 - 1058167
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttataga 308  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||   || |  ||||||||||||| || | |||||||||||||||||||||||||     
T  1058281 ttagggcctgtttgaataaacagcttatttgcagcttatagcacaagcgcttactatgataagcgcttatgtataagcttacataagctatttttatagc 1058182  T
Q  309 aaaagataaaataaa 323  Q
    |||  ||||||||||    
T  1058181 aaatcataaaataaa 1058167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 14956500 - 14956389
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||| |||||||||||||   ||||||||||||||||||||||   || |||||||||||| ||| || | |||||| |||||||||||||||| | ||    
T  14956500 agggcttgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagcttgcataagctatttttattgtaa 14956401  T
Q  311 aagataaaataa 322  Q
    ||||| ||||||    
T  14956400 aagatgaaataa 14956389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 35534813 - 35534704
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    ||||||||||||| |||| | |||||||||||||||||||||     | ||||| ||||||||| | ||| ||||||||||||| ||||||||||| |||    
T  35534813 gggcctgtttggaaaaacagcttatttgcagcttatagcacaggcgtttatcattataagcgctat-gcataagcttacataagatatttttatag-aaa 35534716  T
Q  312 agataaaataaa 323  Q
    ||||||||||||    
T  35534715 agataaaataaa 35534704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 12976086 - 12976190
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagat 315  Q
    |||||||||||||| | ||||||||||||   ||||||    ||||||||||||||||||| || | ||||| ||||||||||||| ||||| |||| ||    
T  12976086 ctgtttggataaacagcttatttgcagct---agcacaggcactcatcatgataagcgcttatgtataagctcacataagctatttctatagcaaaatat 12976182  T
Q  316 aaaataaa 323  Q
    ||||||||    
T  12976183 aaaataaa 12976190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 36963550 - 36963438
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||| |||||||| |||||  |||||||||||||||||||||||   || |||||||||| |||||  | | |||||| | |||||||||| | ||| ||    
T  36963550 agggtctgtttgggtaaacaatttatttgcagcttatagcacaagcgcttatcatgataaacgcttacggataagctttcttaagctatttctctagcaa 36963451  T
Q  311 aagataaaataaa 323  Q
    |||||||||||||    
T  36963450 aagataaaataaa 36963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 9130506 - 9130409
Alignment:
Q  220 ttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    |||||||||  | |||||||||||||||||||||| |  |||||||||||| | ||| || | |||||  |||||||||||||| |||  ||||||||    
T  9130506 ttggataaatagcttatttgcagcttatagcacaagtggtcatcatgataatcacttatgtataagctcgcataagctatttttgtagctaaagataa 9130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 29168250 - 29168145
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    ||||||||| || | |||| |||||||||||||||||    | ||||| | ||| |||| || | ||||| ||||||||||||| ||||| |||||||||    
T  29168250 gtttggatacacaggttatctgcagcttatagcacaagcgtttatcatcaaaagtgcttatgtataagctcacataagctatttctatagcaaaagataa 29168151  T
Q  318 aataaa 323  Q
    ||||||    
T  29168150 aataaa 29168145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 38353242 - 38353325
Alignment:
Q  238 tgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||||||||  |||| | || |||||||||| ||||| || | |||||| |||||||||||||||| | ||||||||||||||    
T  38353242 tgcagcttatattacaagtgcttatcatgataatcgcttatgtataagcttgcataagctatttttat-gcaaaagataaaataa 38353325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 32975997 - 32976036
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  32975997 aagcttgcataagctatttttatagcaaaagataaaataa 32976036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 40980999 - 40981038
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  40980999 cctgtttggataaacagcttatttgcagcttatagcacaa 40981038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 41800041 - 41799978
Alignment:
Q  12 gaatatgagatgtggttttataagcacagaa-agaatacaagtcctggttctcaagatcagacc 74  Q
    |||| ||||||||| || ||||||||| ||| | |||||||||||||||||||| |||||||||    
T  41800041 gaatgtgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagacc 41799978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 38750273 - 38750319
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttatag 307  Q
    |||||||||||||||| || | |||||| ||||||||||||||||||    
T  38750273 atcatgataagcgcttatgtataagcttgcataagctatttttatag 38750319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 27028754 - 27028799
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttata 306  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  27028754 atcatgataagtgcttttgtataagcttacataagttatttttata 27028799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 12497364 - 12497324
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  12497364 aagcttgcataagccatttttatagcaaaagataaaataaa 12497324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 29819089 - 29819045
Alignment:
Q  207 agttagggcctgtttggataaacggtttatttgcagcttatagca 251  Q
    |||||||| ||||||||||||||   |||||||||||||||||||    
T  29819089 agttagggtctgtttggataaacaacttatttgcagcttatagca 29819045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 18814955 - 18815051
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttata 306  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||| | || ||||| |||||| |||||||| ||||||||||||||| ||||||||    
T  18814955 ttagagcctgtttggataaatggtttatttgcagcttatggcacaagtgcttatcat-ataagcacttttgcataagcttacataagctgtttttata 18815051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 43505824 - 43505932
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    |||| |||||||||||||   ||||||||| |||||||||||||  | ||||||||||||| ||| || | |||||| |||||||||||||||||| |||    
T  43505824 gggcatgtttggataaacaacttatttgcaacttatagcacaaa--cgcatcatgataagcacttatgtataagcttgcataagctatttttatagcaaa 43505921  T
Q  312 agataaaataa 322  Q
    |||||||||||    
T  43505922 agataaaataa 43505932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 50681294 - 50681183
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||| |||||||||||||   ||||||  ||||||||||||||   || ||||||||||||| || || | ||||||||| ||||||||||||||| |     
T  50681294 agggcttgtttggataaacaacttatttatagcttatagcacaagaacttatcatgataagcgtttatgtataagcttacaaaagctatttttataggat 50681195  T
Q  311 aagataaaataa 322  Q
    ||||||||||||    
T  50681194 aagataaaataa 50681183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 41336655 - 41336737
Alignment:
Q  240 cagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||| |||| || ||||||||| ||| || | | |||| ||||||||||||||||||  ||||||||||||||    
T  41336655 cagcttatagcacaagttcttattatgataagcacttatgtataggcttgcataagctatttttatag-caaagataaaataaa 41336737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 39603644 - 39603594
Alignment:
Q  203 caagagttagggcctgtttggataaacggtttatttgcagcttatagcaca 253  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||||||||    
T  39603644 caagatttagggcctatttggataaacagcttatttgcagcttatagcaca 39603594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 15173483 - 15173394
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||| |||||| |||||||||  || |||||||||||||| | || | |||||| ||||||||| ||| ||||  |||||||||||||    
T  15173483 ttattttcagcttgtagcacaaacgcttatcatgataagcgcatatgtataagcttgcataagctactttaatagctaaagataaaataa 15173394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 17204003 - 17204115
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    |||| ||||||||||||||   ||||||||||||||||| ||||   || |||| ||||| ||||| ||    |||||||||||||| ||||||||| ||    
T  17204003 agggactgtttggataaacaacttatttgcagcttatagaacaagcacttatcacgataaccgcttatgtgttagcttacataagctgtttttatagcaa 17204102  T
Q  311 aagataaaataaa 323  Q
    | | |||||||||    
T  17204103 atgttaaaataaa 17204115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 24169124 - 24169220
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttat 305  Q
    |||||||||||||| | |||| | ||| |||||||||||| ||| |   || |||||||| ||||||| || |  ||||||||||||||||||||||    
T  24169124 ttagggcctgtttgcagaaacagcttacttgcagcttatatcaccagcacttatcatgattagcgcttatgtatgagcttacataagctatttttat 24169220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 25904343 - 25904303
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  25904343 aagcttacataagctatttttacagcaaaagataaaataaa 25904303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 27089 - 26984
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaa 309  Q
    ||||| ||||||||||||||   || |||||||||||||||||||   || ||||||||||||||    ||| |    ||||||||| |||||||| |||    
T  27089 tagggtctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataagcgc----gcata----tacataagccatttttatggaa 26998  T
Q  310 aaagataaaataaa 323  Q
    ||||||||||||||    
T  26997 aaagataaaataaa 26984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 9760370 - 9760417
Alignment:
Q  276 tttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||| |||||| |||||| ||||||||| |||||||||||||||||    
T  9760370 tttgcataagctttcataagttatttttattgaaaaagataaaataaa 9760417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 31851343 - 31851431
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||  ||||| | || ||||||||||||  || || | ||||| ||||||||||||||||||  ||| |||||||||||    
T  31851343 ttatttgcagcttat--cacaagtgcttatcatgataagcatttatgtagaagctcacataagctatttttataacaaatgataaaataaa 31851431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 2243944 - 2243986
Alignment:
Q  213 ggcctgtttggataaacggtttatttgcagcttatagcacaaa 255  Q
    ||||||||||||||||| | |||||| ||||||||||||||||    
T  2243944 ggcctgtttggataaacagattatttacagcttatagcacaaa 2243986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 22030119 - 22030180
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||| || | ||||| ||||||||||||| ||||| ||| |||||||||||    
T  22030119 atcatgataagcgcttatgtataagctcacataagctatttctatag-aaaggataaaataaa 22030180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 29912813 - 29912926
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaa 309  Q
    |||||||||||||| |||||   |||||||| |||||||||| ||    | ||||| |||||| |||||| | |  ||||||| |||||||| ||||| |    
T  29912813 tagggcctgtttggctaaacaaattatttgctgcttatagcataagcagttatcataataagcacttttgtatacacttacatcagctatttctatagca 29912912  T
Q  310 aaagataaaataaa 323  Q
    ||| ||||||||||    
T  29912913 aaaaataaaataaa 29912926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 38337101 - 38337056
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaa 254  Q
    |||||||||||||||||  || ||||||| ||||||||||||||||    
T  38337101 ttagggcctgtttggatggactgtttattcgcagcttatagcacaa 38337056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 8422962 - 8422930
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||| ||||||||||||||||    
T  8422962 ataagctatttttataaaaaaagataaaataaa 8422930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 19494775 - 19494891
Alignment:
Q  207 agttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttata 306  Q
    |||||| | |||||| |||||||   ||||| | |||||||||||||| | ||  ||||||||||| | | || | ||| |||||||||||| || ||||    
T  19494775 agttagagtctgtttagataaacatcttattcggagcttatagcacaagtacttttcatgataagcacctatgtataaggttacataagctagttctata 19494874  T
Q  307 gaaaaagataaaataaa 323  Q
    | ||| |||||||||||    
T  19494875 gcaaatgataaaataaa 19494891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 21193943 - 21193975
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||| |||||||||||||||    
T  21193943 ataagctatttttatagtaaaagataaaataaa 21193975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 3735695 - 3735584
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    ||||||||||||||||||    |||||||||||||||||||||    | |||||||||||||||| || | ||||||||||||||||||| ||||| |||    
T  3735695 gggcctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgataagcgcttatggataagcttacataagctatttctatagcaaa 3735596  T
Q  312 agataaaataaa 323  Q
    |||| |||||||    
T  3735595 agatgaaataaa 3735584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 7319209 - 7319104
Alignment:
Q  218 gtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataa 317  Q
    ||||| |||||| | |||||| |||||||||||||||   || |||||||||||| ||| |||| ||||||||||||||||||| ||  | |||| ||||    
T  7319209 gtttgaataaacagcttatttacagcttatagcacaagcgcttatcatgataagcacttatgcataagcttacataagctatttctaacgcaaaatataa 7319110  T
Q  318 aataaa 323  Q
    ||||||    
T  7319109 aataaa 7319104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 12554334 - 12554440
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagata 316  Q
    |||||||||||||   |||||||||||||| ||||||||  || || ||||||||   ||  ||| |||||| |||||||||||||||||| ||| ||||    
T  12554334 tgtttggataaacaacttatttgcagcttaaagcacaaacgcttattatgataagtatttacgcataagcttccataagctatttttatagtaaatgata 12554433  T
Q  317 aaataaa 323  Q
    |||||||    
T  12554434 aaataaa 12554440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 7706186 - 7706078
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaa----gcttacataagctattttta 304  Q
    |||||||||||||| ||||||   |||||||||| ||||||||||| | || ||||||||| |  ||| |||| ||    ||||||||||||||||||||    
T  7706186 ttagggcctgtttgtataaacaacttatttgcaggttatagcacaagtgcttatcatgata-gtacttatgcataaataagcttacataagctattttta 7706088  T
Q  305 tagaaaaaga 314  Q
    ||||||||||    
T  7706087 tagaaaaaga 7706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 19460572 - 19460520
Alignment:
Q  220 ttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagc 272  Q
    |||||||||| | |||||||||||||||||||||||| || ||||||||||||    
T  19460572 ttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataagc 19460520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 25461960 - 25461853
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||||||||||||||| | | ||||||| |||||||| |||||   || ||||||||||| | || |  | |||||| |||||||||||||||||| |     
T  25461960 agggcctgtttggataagcaggttatttgtagcttataacacaagcgcttatcatgataagtggttatatataagcttgcataagctatttttatagcag 25461861  T
Q  311 aagataaa 318  Q
    ||||||||    
T  25461860 aagataaa 25461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 278823 - 278877
Alignment:
Q  155 aatcaatatctagtagaggtcctgctactgatccagatagtctctattcaagagt 209  Q
    |||||| |||||||||||||||||||||||||||| | || |||||| |||||||    
T  278823 aatcaagatctagtagaggtcctgctactgatccacagagcctctatgcaagagt 278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 2973665 - 2973612
Alignment:
Q  269 aagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||    
T  2973665 aagcgcttctgcataagcttacataagccatttt-atagaaaaagataaaataaa 2973612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 13697959 - 13697853
Alignment:
Q  216 ctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagat 315  Q
    ||||||||||||||   |||||||||||||||| || ||    | ||||||||||| | ||||||| || ||| |||||  ||||||||||| |||||||    
T  13697959 ctgtttggataaacaacttatttgcagcttataacataagcatttatcatgataagtgattttgcataaacttgcataaattatttttatagcaaaagat 13697860  T
Q  316 aaaataa 322  Q
    |||||||    
T  13697859 aaaataa 13697853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 24030601 - 24030495
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagata 316  Q
    ||||||||||||| | ||||||||||||||||||||||   || ||||||||||| ||   || | ||||| ||||||||||||  ||||| ||  ||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataagtgcgcgtgtataagctcacataagctattgctatagcaaccgata 24030502  T
Q  317 aaataaa 323  Q
    |||||||    
T  24030501 aaataaa 24030495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 32009905 - 32009967
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttatag-aaaaagataaaataa 322  Q
    ||||||||| ||| || |||| |||||||| |||||||||||||||| |||||||||||||||    
T  32009905 atcatgatatgcgattatgcataagcttacgtaagctatttttatagaaaaaagataaaataa 32009967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 9107053 - 9107089
Alignment:
Q  287 ttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9107053 ttacataagctatttttaaagaaaaagataaaataaa 9107089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 32372489 - 32372601
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaa 310  Q
    ||||| |||||||||||||   ||||||||||||||||||||||   || |||||||||||| ||| || | |  ||||||||| ||||| |||||| |     
T  32372489 agggcatgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtatacacttacataaactattattatagcac 32372588  T
Q  311 aagataaaataaa 323  Q
      |||||||||||    
T  32372589 ctgataaaataaa 32372601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 35445992 - 35446032
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  35445992 aagcttacataagctatttttatagcaaatgataaaataaa 35446032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 278671 - 278722
Alignment:
Q  30 tataagcacagaa-agaatacaagtcctggttctcaagatcagaccttaagc 80  Q
    ||||||||| ||| ||||||||||| |||||||||| |||||||||||||||    
T  278671 tataagcactgaagagaatacaagtactggttctcaggatcagaccttaagc 278722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 16458111 - 16458072
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataa 322  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  16458111 aagcttgcataagctatttttatagcaaaagataaaataa 16458072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 39594751 - 39594785
Alignment:
Q  289 acataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||| |||||||||||||||||||||    
T  39594751 acataagctatttctatagaaaaagataaaataaa 39594785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 3569153 - 3569097
Alignment:
Q  209 ttagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgat 268  Q
    |||||||||||||||||    ||||||||||||||||||||||||| | || ||||||||    
T  3569153 ttagggcctgtttggatt---ggtttatttgcagcttatagcacaagtgcttatcatgat 3569097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 3932814 - 3932781
Alignment:
Q  287 ttacataagctatttttatagaaaaagataaaat 320  Q
    ||||||||||||||||||||| ||||||||||||    
T  3932814 ttacataagctatttttatagcaaaagataaaat 3932781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 9202939 - 9202878
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    |||||||||||||||   |||||||||||||||||||||| |  | ||||||||||| ||||    
T  9202939 cctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgctt 9202878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 35299624 - 35299713
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    ||||||||||| || |||||||   || ||||||||  || ||| |||| |||||||||||||||| ||| ||| |||||||||| ||||    
T  35299624 ttatttgcagcatagagcacaagcacttatcatgatcggcacttatgcaaaagcttacataagctactttcataaaaaaagataacataa 35299713  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 25460956 - 25461064
Alignment:
Q  210 tagggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaa 309  Q
    |||||| ||||||||||||| | |||| |  ||||||||||| ||   || ||||||||||| |||| |  | |||||| | |||||||||||| ||| |    
T  25460956 tagggcatgtttggataaacagcttatatttagcttatagcataagcacttatcatgataagagcttatatataagcttgcgtaagctatttttctagca 25461055  T
Q  310 aaagataaa 318  Q
    |||||||||    
T  25461056 aaagataaa 25461064  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 28776920 - 28776952
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||| |||||||||||||||||    
T  28776920 ataagctatttttattgaaaaagataaaataaa 28776952  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 29925780 - 29925816
Alignment:
Q  285 gcttacataagctatttttatagaaaaagataaaata 321  Q
    |||| |||||||||||||||||| |||||||||||||    
T  29925780 gcttgcataagctatttttatagcaaaagataaaata 29925816  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 42500358 - 42500318
Alignment:
Q  283 aagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    |||||| |||||||||||||||||  |||||||||||||||    
T  42500358 aagcttgcataagctatttttatatcaaaagataaaataaa 42500318  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 24626164 - 24626268
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaaga 314  Q
    |||||||||||||||   |||||| ||||||||||||||||| || |||||||| |  |||| || | ||||||||||||||||||| ||||| ||| ||    
T  24626164 cctgtttggataaacaacttatttacagcttatagcacaaatgcttatcatgatgattgcttatgtataagcttacataagctatttctataggaaagga 24626263  T
Q  315 taaaa 319  Q
    |||||    
T  24626264 taaaa 24626268  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 6538383 - 6538488
Alignment:
Q  212 gggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaa 311  Q
    |||||||||||||||||  | ||||||||||||||||||||||   || || ||||||||||||| || | |||||| |||||| || |||| ||| |||    
T  6538383 gggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagcttgcataagttagttttttagcaaa 6538482  T
Q  312 agataa 317  Q
    ||||||    
T  6538483 agataa 6538488  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 35070812 - 35070723
Alignment:
Q  235 atttgcagcttatagcacaaattctcatcatgataagcgcttttgc-acaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||| ||||||||||||   ||  ||||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||    
T  35070812 atttgcaccttatagcacaagcacttgtcatgataagcactaatgctataagcttacataagctatttttatagaaaaagataaaataaa 35070723  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 8147618 - 8147679
Alignment:
Q  261 atcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||||||||    
T  8147618 atcatgataagcgcttaagcataagct-acataagctatttttatagcaaaagataaaataaa 8147679  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 18076083 - 18076172
Alignment:
Q  233 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaaataa 322  Q
    ||||||||||||||||||||||   || ||||| |||||| ||| || | |||||| |||||| ||||||||||| |||||| |||||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataagcacttatgtataagcttgcataagttatttttatagcaaaagagaaaataa 18076172  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 34430581 - 34430669
Alignment:
Q  211 agggcctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctat 299  Q
    ||||| ||||| |||||||   |||||||||||||||||||||| | || ||||||||| |||||| || | |||||| ||||||||||    
T  34430581 agggcatgtttcgataaacatcttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagcttccataagctat 34430669  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 31623487 - 31623534
Alignment:
Q  273 gcttttgcacaagcttacataagctatttttatagaaaaagataaaat 320  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||    
T  31623487 gcttatgcataagcttacattagctatttttatagaaaaagataaaat 31623534  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 30926431 - 30926510
Alignment:
Q  239 gcagcttatagcacaaattctcatcatgataagcgcttttgcacaagcttacataagctatttttatagaaaaagataaa 318  Q
    ||||||||||||||||   || ||||||||||||  ||  | | ||||||||||||||||||| ||||| ||||||||||    
T  30926431 gcagcttatagcacaagggcttatcatgataagcaattaagtataagcttacataagctatttctatagtaaaagataaa 30926510  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 4163118 - 4163152
Alignment:
Q  289 acataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||||||| ||||||||||||    
T  4163118 acataagctatttttatagaaatagataaaataaa 4163152  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 4224739 - 4224773
Alignment:
Q  289 acataagctatttttatagaaaaagataaaataaa 323  Q
    |||||||||||||||||||||| ||||||||||||    
T  4224739 acataagctatttttatagaaatagataaaataaa 4224773  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 264250 - 264311
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgctt 276  Q
    ||||||||||| ||| | | |||||||||||||||||||| | || ||||||||||| ||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgctt 264311  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 658636 - 658580
Alignment:
Q  215 cctgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataag 271  Q
    |||||||||||||||  ||||||| || |||||||||||| | || |||||||||||    
T  658636 cctgtttggataaactatttattttcaacttatagcacaagtacttatcatgataag 658580  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 2455145 - 2455205
Alignment:
Q  217 tgtttggataaacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttt 277  Q
    ||||||||| |||  |||||||||||||||| |||||| | |||||| | |||||||||||    
T  2455145 tgtttggatgaacaatttatttgcagcttatggcacaagtgctcatcgtaataagcgcttt 2455205  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 21403 - 21371
Alignment:
Q  291 ataagctatttttatagaaaaagataaaataaa 323  Q
    ||||||||||||||||| |||||||||||||||    
T  21403 ataagctatttttataggaaaagataaaataaa 21371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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