View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_99 (Length: 325)
Name: NF19530_low_99
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_99 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 31107135 - 31107454
Alignment:
| Q |
4 |
atctcgaagaatattgggaagacaaaaatgccttaccttttatcggcacaagtttataatccaagcactaaatcctggacatctaccctcgattgtcctc |
103 |
Q |
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| T |
31107135 |
atctctaataatattgggaagacgaaaatgccttaccttttatcggcacaagtttataatccaatcactaaatcctggacat--accctcgattgtcctc |
31107232 |
T |
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| Q |
104 |
ctcttactatggtcacacctcaacaaccttcaaagatacaacactcttgttaacggtgtttatcattaaattacgagctctgattgctatcatgctacaa |
203 |
Q |
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| T |
31107233 |
ctcttactatggtcacacctcaacaacctccaaagatacaacactcttgttaacggtgtttataattaaattacgagctctgattgctatcatgctacaa |
31107332 |
T |
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| Q |
204 |
acattctctgcttttgacttccgcaataaccagtttcgacaacttgaagtatatagaaaatgctgatgtatataaatcaattcatatgtgttatgagtaa |
303 |
Q |
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| T |
31107333 |
acattctctgcttttgacttccgcaataaccagtttcgacaacttgaagtatatagaaaatgctgatgtatataaatcaattcatatgtgttatgagtaa |
31107432 |
T |
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| Q |
304 |
cacagaaccgaagtgatcttaa |
325 |
Q |
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| T |
31107433 |
cacagaaccgaagtgatcttaa |
31107454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 31103770 - 31103630
Alignment:
| Q |
99 |
tcctcctcttactatggtcacacctcaacaaccttcaaagatacaacactcttgttaacggtgtttatcattaaattacgagctctgattgctatcatgc |
198 |
Q |
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| T |
31103770 |
tcctcctattactatggtcacacggatacagccttcaa-gatacaacactcttgttaacggtgtttattattggattacaagctctgatggctctgatgc |
31103672 |
T |
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| Q |
199 |
tacaaacattctctgcttttgacttccgcaataaccagtttcg |
241 |
Q |
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| T |
31103671 |
tgcaagaatcctttgc-tttgactttcgcgataaccagtttcg |
31103630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 31105652 - 31105571
Alignment:
| Q |
25 |
acaaaaatgccttaccttttatcggcacaagtttataatccaagcactaaatcctggacatctaccctcgattgtcctcctc |
106 |
Q |
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| T |
31105652 |
acaaaaatgctttatcttttatcgtcacaagtttataatctaagcactaaatcttggacacctatcctcaatagtcctcctc |
31105571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 31097191 - 31097137
Alignment:
| Q |
124 |
caacaaccttcaaagatacaacactcttgttaacggtgtttatcattaaattacga |
179 |
Q |
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| T |
31097191 |
caacaaccttcaa-gatacaacactcttgctaacggtgtttatcattggattacga |
31097137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 31101738 - 31101691
Alignment:
| Q |
255 |
tatagaaaatgctgatgtatataaatcaattcatatgtgttatgagta |
302 |
Q |
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| T |
31101738 |
tatagacaatgctgaagtatataaatcaattcatgtgtgttacgagta |
31101691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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