View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_high_12 (Length: 250)
Name: NF19531_high_12
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 5418950 - 5419027
Alignment:
| Q |
128 |
agatgacaaacagaagaccaaatcacaagaactttatttatctaaggaaccaaattacaagaaataaacagtaaagta |
205 |
Q |
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| T |
5418950 |
agatgacaaacagaagaccaaatcacaagaactttttttatctaaggaaccaaattacaagaactaaaccgtaaagta |
5419027 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 5427366 - 5427428
Alignment:
| Q |
141 |
aagaccaaatcacaagaactttatttatctaaggaaccaaattacaagaaataaacagtaaag |
203 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||| |
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| T |
5427366 |
aagaccaaatcacaagaacttttattttctaaggaaccaaattacaagaactaaaccgtaaag |
5427428 |
T |
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