View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_high_2 (Length: 483)
Name: NF19531_high_2
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 36650971 - 36650514
Alignment:
| Q |
8 |
cgaagaatatcccagtttggttggctcgcagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgtt |
107 |
Q |
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| T |
36650971 |
cgaagaaaatgccagtttggtcggctcgcagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgtt |
36650872 |
T |
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| Q |
108 |
gatgatttggccgaggttgtggctgcaatgaggggcgtgccttattttttatgtgagatgaacgagctcactggagaaaatagattcattatggatttta |
207 |
Q |
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| T |
36650871 |
gatgatttggccaaggttgtggctgcaatgaggggtgtgccttattttttgcgtgagatgaacgagctcactggagaaaatagtttcattatggatttta |
36650772 |
T |
|
| Q |
208 |
caccgagttactcgatcacccttggtatggagggcttgttaaatttaccctccacaccaagaattgttggtaagcattgcggttaccatgctagtagcaa |
307 |
Q |
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| T |
36650771 |
caccgagttactcgatcacccttggtatggagggcttgttaaatttaccctccacaccaagaattgttggtaagcattgcggttaccatgctagtagcaa |
36650672 |
T |
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| Q |
308 |
atccttggttgctgatcttcagctcggacagatgatgttgatgagcatgtttaatgttgttgagcatctggctgcgtttggtatttttggagtgcctagt |
407 |
Q |
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| T |
36650671 |
atccttggttgctgatcttcagcttggacagatgatgttgatgagcgtgtttaatgttgttgagcatctggctgcgtttggtattcttggagtgcctagt |
36650572 |
T |
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| Q |
408 |
ggaagtgtgagaactgacccctttttcgacagtaatgtaaggaagtatgggctaaggt |
465 |
Q |
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| T |
36650571 |
ggaagtgtgagaactgaccccttttttgacagtaatgtaaggaagtatgggctaaggt |
36650514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 448
Target Start/End: Original strand, 36642879 - 36643039
Alignment:
| Q |
288 |
ggttaccatgctagtagcaaatccttggttgctgatcttcagctcggacagatgatgttgatgagcatgtttaatgttgttgagcatctggctgcgtttg |
387 |
Q |
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|||||| |||||| |||||||| ||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||||| ||| || | |
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| T |
36642879 |
ggttactatgctactagcaaatgcttggtttccgatcttcagctcgtacagatgatgttgatgagcgtgtttaatgtcgtcgagaatctgggtgccttcg |
36642978 |
T |
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| Q |
388 |
gtatttttggagtgcctagtggaagtgtgagaactgacccctttttcgacagtaatgtaag |
448 |
Q |
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| T |
36642979 |
gcattttcggcttacctagtggaaatgtgaaaactgatccctatttcaacagtaatttaag |
36643039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 36642488 - 36642579
Alignment:
| Q |
36 |
cagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgttgatgatttggccgaggttgt |
127 |
Q |
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| T |
36642488 |
cagcctatgtatggaagccccgaaaggttgtggaataacataatcaatatagccatcaaaatgggtcctattgaagatttgaccgaggttgt |
36642579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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