View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_high_6 (Length: 362)
Name: NF19531_high_6
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 38482991 - 38482845
Alignment:
| Q |
6 |
gggtagattatactaataaaagaagtcatgatttctaaatgtaaatgactttctctaccaacaaaatgttcttctctaagtatatatatacagagaaaac |
105 |
Q |
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| T |
38482991 |
gggtagaatttactaataaaagaagtcatgatttctaaatgtaaatgactttctctaccaacaaaatgttcttctctaagtatatatatacagacaaaac |
38482892 |
T |
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| Q |
106 |
aacataggtaggaatgacaaaactaattgcatttttaaaataaccta |
152 |
Q |
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| T |
38482891 |
aacataggtagagatgacaaaactaattgcatttttaaaataaccta |
38482845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 38482779 - 38482656
Alignment:
| Q |
218 |
atcagcccatataatacttctacgagtcaaggcatgacaaagtttattgaaaagaaaatagagttttcaattttatcattttcaatcacttctaattcgc |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38482779 |
atcagcccatataatacttctatgagtcaaggcatgacaaagtttattgaaaagaaaataaagttttcaattttatcattttcaatcacttctaattcgc |
38482680 |
T |
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| Q |
318 |
ccatgcagtctttctaggagccaa |
341 |
Q |
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| T |
38482679 |
ccatgcaatctttctaggagccaa |
38482656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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