View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_high_7 (Length: 336)
Name: NF19531_high_7
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 49910857 - 49910551
Alignment:
| Q |
19 |
ctcttttcaagcataaaagcactgctatatatatat------gctactct-gttgt-----tgaatgaattgaatttagctggcattttcaaatacaaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49910857 |
ctcttttcaagcataaaagcactgctatatatatatatatatgctactgttgttgaatgaatgaatgaattgaatttagctggcattttcaaatacaaac |
49910758 |
T |
|
| Q |
107 |
acactttttgtaattccctccctctccctcctcaacccactcactctcattctcactgccagccaagagtgaattagcaaggctgggacacccacaccaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49910757 |
acactttttgtaattccctccctctccctcctcaacccactcactctcattctcactgccagccaagagtgaattagcaaggctgggacacccacactaa |
49910658 |
T |
|
| Q |
207 |
ctgtattctgtactacacacccaacctacgcacgcagtttttgcttttctctccaaaacattaacaaccaacgtttcttttgtctctcctctactattcc |
306 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49910657 |
cagtattctgtactacacacccaacctacgcacgcagtttttgcttttctctccaaaacattaacaaccaacgtttcttttgtctctcctccactattcc |
49910558 |
T |
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| Q |
307 |
gtataca |
313 |
Q |
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||||||| |
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| T |
49910557 |
gtataca |
49910551 |
T |
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