View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19531_low_1 (Length: 540)
Name: NF19531_low_1
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Complemental strand, 34078781 - 34078271
Alignment:
| Q |
13 |
aatattagtctcaaaaatcattcgagataggcatataggaaaatctccatctttgcataagaaaaataaccttcctcctggcccaccaaggtggcctatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078781 |
aatattagtctcaaaaatcattcgagataggcatataggaaaatctccatctttggataagaaaaataaccttcctcctggcccaccaaggtggcctatt |
34078682 |
T |
|
| Q |
113 |
gttggtaaccttctccaattagggcaacttcctcatagagacttagcatcattatgtgataaatatggacccttagtttatttaaaattaggaaatattg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078681 |
gttggtaaccttctccaattagggcaacttcctcatagagacttagcatcattatgcgataaatatggacccttagtttatttaaaattaggaaatattg |
34078582 |
T |
|
| Q |
213 |
atgctattactactaatgaccctgatattatacgtgaaatacttctttctcaagatgatgtttttgcctctcgtccacgcactcttgctgcaattcattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078581 |
atgctattactactaatgaccctgatattatacgtgaaatacttctttctcaagatgatgtttttgcctctcgtccacgcactcttgctgcaattcattt |
34078482 |
T |
|
| Q |
313 |
agcatatgggtgtggtgatgttgcattggcaccattaggacctcattggaagcgaatgagaagaatttgcatggaacacttactaactacaaagagactt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078481 |
agcatatgggtgtggtgatgttgcattggcaccattaggacctcattggaagcgaatgagaagaatttgcatggaacacttactaactacaaagagactt |
34078382 |
T |
|
| Q |
413 |
gaatccttctcaaaacatcgtcaagaagaagcacaacatcttgttaaagatgtttttgcacgggccaatttcgaaaatcccattaatttaagagaaattt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
34078381 |
gaatccttctcaaaacatcgtcaagaagaagcacaacatcttgttaaagatgtttttgcacgggccaaatccgaaaatcccattaatttaagagaaattt |
34078282 |
T |
|
| Q |
513 |
tgggtgctttt |
523 |
Q |
| |
|
||||||||||| |
|
|
| T |
34078281 |
tgggtgctttt |
34078271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University