View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_low_12 (Length: 278)
Name: NF19531_low_12
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 39803109 - 39803368
Alignment:
| Q |
10 |
gaagaatatgttgatcatttgttttcttattgtgattggtttggtgaaatttgggatctagttttaaattggtttagtatttatagcattctctctaatt |
109 |
Q |
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| T |
39803109 |
gaagaatatgttgatcatttgttttcttattgtgattggtttggtgaaatttgggatctagttttaaattggtttagtatttatagcattctctctaatt |
39803208 |
T |
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| Q |
110 |
atgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatgcaagtcttaattgacttgctagtgtttgaaatatttggat |
209 |
Q |
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| T |
39803209 |
atgtttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatgcaagtcttaattgacttgctagtgtttgaaatatttggat |
39803308 |
T |
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| Q |
210 |
ggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcatatacttgatgatgt |
269 |
Q |
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| T |
39803309 |
ggagaaaaatgcttgtttttttcgtgataaagggcttttgattcatatacttgataatgt |
39803368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 39811105 - 39811298
Alignment:
| Q |
70 |
gttttaaattggtttagtatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatg |
169 |
Q |
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| T |
39811105 |
gttttaaattggtttagcatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcagtgttgtgctctaaagagatacatg |
39811204 |
T |
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| Q |
170 |
caag------tcttaattgacttgctagtgtttgaaatatttggatggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcatat |
257 |
Q |
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| T |
39811205 |
caagtcttcatcttaattgacttgctcatgtttgaagtatttggacggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcatat |
39811298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 39811070 - 39811108
Alignment:
| Q |
13 |
gaatatgttgatcatttgttttcttattgtgattggttt |
51 |
Q |
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| T |
39811070 |
gaatatgttgatcgtttgttttcttattgttattggttt |
39811108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 43911865 - 43911910
Alignment:
| Q |
38 |
attgtgattggtttggtgaaatttgggatctagttttaaattggtt |
83 |
Q |
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| T |
43911865 |
attgtgattggtttggtaaagtttgggttctaattttaaattggtt |
43911910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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