View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_low_14 (Length: 238)
Name: NF19531_low_14
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_low_14 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 564 - 344
Alignment:
| Q |
1 |
ctcaacttgtgtgaaagtgatgttaaacaagattgtttctagtgagttcatggacaactacaggaagacaaagtttgacgttccactcttggaaaagctc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||| |
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| T |
564 |
ctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcatggacacctacaggaagacgaatcttgacattccactcttggaaaagctc |
465 |
T |
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| Q |
101 |
cagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaataggctcaaaaatgctgtctccaatgttaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
464 |
cagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaacaggctcaaaaatgctgtctcgaatgttaact |
365 |
T |
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| Q |
201 |
atttgtttggtgatataaagt |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
364 |
atttgtttggttatataaagt |
344 |
T |
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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17311002 - 17311171
Alignment:
| Q |
1 |
ctcaacttgtgtgaaagtgatgttaaacaagattgtttctagtgagttcatggacaactacaggaagacaaagtttgacgttccactcttggaaaagctc |
100 |
Q |
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||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| ||| | ||||||||||| ||| |
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| T |
17311002 |
ctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgtggacaactacaggaggacgaagcttgatgtttcgctcttggaaaatctc |
17311101 |
T |
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| Q |
101 |
cagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaata |
170 |
Q |
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| T |
17311102 |
aagacagaactgctcagttttgaagttgtagttaacgatgatgctgttagtgtcaatgtatggttgaata |
17311171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4184343 - 4184389
Alignment:
| Q |
1 |
ctcaacttgtgtgaaagtgatgttaaacaagattgtttctagtgagt |
47 |
Q |
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|||||||| |||||| ||| ||||| ||||||||||||||||||||| |
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| T |
4184343 |
ctcaacttctgtgaaggtgctgttagacaagattgtttctagtgagt |
4184389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5964950 - 5965008
Alignment:
| Q |
1 |
ctcaacttgtgtgaaagtgatgttaaacaagattgtttctagtgagttcatggacaact |
59 |
Q |
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|||| ||| |||||| ||| ||||||||||||||||||||||| ||||| | ||||||| |
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| T |
5964950 |
ctcagcttctgtgaaggtgttgttaaacaagattgtttctagtcagttcgtcgacaact |
5965008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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