View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19531_low_17 (Length: 213)
Name: NF19531_low_17
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 36388448 - 36388265
Alignment:
| Q |
14 |
cacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagtcagaatgattgcaactagt |
113 |
Q |
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| T |
36388448 |
cacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagtcagaatgattgcaactagt |
36388349 |
T |
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| Q |
114 |
aattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctcccttt |
197 |
Q |
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| T |
36388348 |
aattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctcccttt |
36388265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 36388226 - 36388194
Alignment:
| Q |
128 |
acaattgcaattatagaagctacaagaattgca |
160 |
Q |
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| T |
36388226 |
acaattgcaattatagaagctacaagaattgca |
36388194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 36412262 - 36412230
Alignment:
| Q |
128 |
acaattgcaattatagaagctacaagaattgca |
160 |
Q |
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| T |
36412262 |
acaattgcaactatagaagctacaagaattgca |
36412230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 36417593 - 36417561
Alignment:
| Q |
128 |
acaattgcaattatagaagctacaagaattgca |
160 |
Q |
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| T |
36417593 |
acaattgcaactatagaagctacaagaattgca |
36417561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 36426421 - 36426389
Alignment:
| Q |
128 |
acaattgcaattatagaagctacaagaattgca |
160 |
Q |
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| T |
36426421 |
acaattgcaactatagaagctacaagaattgca |
36426389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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