View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19531_low_3 (Length: 477)

Name: NF19531_low_3
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19531_low_3
NF19531_low_3
[»] chr6 (5 HSPs)
chr6 (14-469)||(26229419-26229874)
chr6 (14-74)||(10172666-10172726)
chr6 (15-77)||(34884328-34884390)
chr6 (15-77)||(3419186-3419248)
chr6 (425-469)||(26222404-26222448)
[»] chr7 (6 HSPs)
chr7 (14-75)||(44970292-44970353)
chr7 (15-77)||(14784655-14784717)
chr7 (15-73)||(17756845-17756903)
chr7 (15-77)||(36724168-36724230)
chr7 (15-77)||(1075805-1075867)
chr7 (37-77)||(15234686-15234726)
[»] chr4 (6 HSPs)
chr4 (15-77)||(9456973-9457035)
chr4 (262-333)||(10700743-10700814)
chr4 (262-333)||(10914513-10914584)
chr4 (15-67)||(45071279-45071331)
chr4 (262-336)||(10670186-10670260)
chr4 (262-336)||(10883825-10883899)
[»] chr1 (2 HSPs)
chr1 (15-74)||(36565603-36565662)
chr1 (15-76)||(4198476-4198537)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-77)||(181762-181824)
[»] chr5 (2 HSPs)
chr5 (15-77)||(4428700-4428762)
chr5 (37-77)||(17549407-17549447)
[»] chr2 (1 HSPs)
chr2 (15-77)||(13764853-13764915)
[»] chr3 (4 HSPs)
chr3 (15-77)||(25644852-25644914)
chr3 (17-75)||(43410392-43410450)
chr3 (15-77)||(47100096-47100158)
chr3 (32-68)||(38233025-38233061)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 26229419 - 26229874
Alignment:
Q  14 ataacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccgnnnnnnnnncttaagatccgccactggagagagcaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||| ||    
T  26229419 ataacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccaaaaaatatacttaagatccgccactggggagagaaa 26229518  T
Q  114 cttccatttctgaattctagtgatggaaagcaacaagaataatgagttacttgtgacccatagtccttatataccccttatgtgtaaatatcattatgcc 213  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||    
T  26229519 cttccatttctgaattctagtgatagaaagcaacaagaataatgagttacttgtgacccataatccttatataccccttatgtgtaaataccattacgcc 26229618  T
Q  214 cttggtcttaatcattctcattccgacactgatagtttaacccacacataactgacactgtataatagtattttctgttttaccataaccttcttggaca 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  26229619 cttggtcttaatcgttctcattccgacactgatagtttaacccacacataacttacactgtataatagtattttctgttttaccataaccttcctggaca 26229718  T
Q  314 ctctccctctgatacatcgactgctaaattttcgaacttgacgagcgcgatattacactaacatcacatacatttaaattgtattttatacgatgtgaga 413  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26229719 ctctccctctgatacatcgactgctaaattttcggacttgacgagcgggatgttacactaacatcacatacatttaaattgtattttatacgatgtgaga 26229818  T
Q  414 tacaatgcatatctaaataacacatattgagaaacacaaattccatgtatattctt 469  Q
     ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  26229819 cacagtgcatgtctaaataacacatattgagaaacacaaattccatgtattttctt 26229874  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10172666 - 10172726
Alignment:
Q  14 ataacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacaccc 74  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  10172666 ataacaatgttttacatttttataaactatttaatatatattcttcaaatatttggcaccc 10172726  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 34884390 - 34884328
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||| ||| |||| |||| ||||| |||||||||||||||||||||||||| ||||||||    
T  34884390 taacaatattgaacattttttgaaactgtttaatatatattcttcaaatatttggcacccccg 34884328  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 3419186 - 3419248
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||| |||| || || ||||||||||||| |||||||||||| ||||||||    
T  3419186 taacaatgttgcacatcttttgaatctgtttaatatatatttttcaaatatttggcacccccg 3419248  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 26222404 - 26222448
Alignment:
Q  425 tctaaataacacatattgagaaacacaaattccatgtatattctt 469  Q
    ||||||||||||||||  |||||| |||||||||||||| |||||    
T  26222404 tctaaataacacatatcaagaaactcaaattccatgtattttctt 26222448  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 44970292 - 44970353
Alignment:
Q  14 ataacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccc 75  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  44970292 ataacaatgttgtacatttttttaaattatttaatatatattcttcaaatatttgacacccc 44970353  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 14784717 - 14784655
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    |||||| |||| |||| || | ||||| |||||||||||||||||||||||||| ||||||||    
T  14784717 taacaacgttgcacattttgtgaaactgtttaatatatattcttcaaatatttggcacccccg 14784655  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 17756845 - 17756903
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacc 73  Q
    |||||||| || |||| |||| ||||| |||||||||||||||||||||||||| ||||    
T  17756845 taacaatgatgcacattttttgaaactgtttaatatatattcttcaaatatttggcacc 17756903  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 36724168 - 36724230
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||| |||| || || ||||||||||||| |||||||||||| ||||||||    
T  36724168 taacaatgttgcacatcttttgaatctgtttaatatatatttttcaaatatttggcacccccg 36724230  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 1075867 - 1075805
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||| |||| || || ||||||||||||| || ||||||||| ||||||||    
T  1075867 taacaatgttgcacatcttttgaatctgtttaatatatattttttaaatatttggcacccccg 1075805  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 15234726 - 15234686
Alignment:
Q  37 aaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  15234726 aaactgtttaatatatattcttaaaatatttggcacccccg 15234686  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 9457035 - 9456973
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  9457035 taacaatgttgcacatattttgaaactatttaatatctattattcaaatatttgacacccccg 9456973  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 10700814 - 10700743
Alignment:
Q  262 taactgacactgtataatagtattttctgttttaccataaccttcttggacactctccctctgatacatcga 333  Q
    |||||||||||| || ||||||| ||| || || ||||||||||| ||||||||||||||||||||||||||    
T  10700814 taactgacactgcatcatagtatcttccgtcttgccataaccttcctggacactctccctctgatacatcga 10700743  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 10914584 - 10914513
Alignment:
Q  262 taactgacactgtataatagtattttctgttttaccataaccttcttggacactctccctctgatacatcga 333  Q
    |||||||||||| || ||||||| ||| || || ||||||||||| ||||||||||||||||||||||||||    
T  10914584 taactgacactgcatcatagtatcttccgtcttgccataaccttcctggacactctccctctgatacatcga 10914513  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 45071279 - 45071331
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatattt 67  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  45071279 taacaatgttgcacattttttgaaactatttaatatatattcttcaaatattt 45071331  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 10670186 - 10670260
Alignment:
Q  262 taactgacactgtataatagtattttctgttttaccataaccttcttggacactctccctctgatacatcgactg 336  Q
    |||||||||||| || ||||||| |||| | || |||||||||||  ||||||||||||||||||||||| ||||    
T  10670186 taactgacactgcatcatagtatcttctatcttgccataaccttcccggacactctccctctgatacatcaactg 10670260  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 10883825 - 10883899
Alignment:
Q  262 taactgacactgtataatagtattttctgttttaccataaccttcttggacactctccctctgatacatcgactg 336  Q
    |||||||||||| || ||||||| |||| | || |||||||||||  ||||||||||||||||||||||| ||||    
T  10883825 taactgacactgcatcatagtatcttctatcttgccataaccttcccggacactctccctctgatacatcaactg 10883899  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 36565662 - 36565603
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacaccc 74  Q
    ||||||| ||| |||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  36565662 taacaatattgaacattttttgaaactgtttaatatatattcttcaaatatttgacaccc 36565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 4198476 - 4198537
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacaccccc 76  Q
    ||||||| |||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||    
T  4198476 taacaatattgtacattttttaaaactgtttaatatatattctttaaatatttggcaccccc 4198537  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 181762 - 181824
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||||||||||| || | ||||||||||  |||||||||||| ||||||||    
T  181762 taacaatgttgcacatatttttaatctgtataatatatatctttcaaatatttggcacccccg 181824  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 4428762 - 4428700
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||| ||| | || |||| ||||| |||||||||||||||||||||||||| ||||||||    
T  4428762 taacaatattgaatattttttaaaactgtttaatatatattcttcaaatatttggcacccccg 4428700  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 17549407 - 17549447
Alignment:
Q  37 aaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  17549407 aaactgtttaatatatattcttaaaatatttggcacccccg 17549447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 13764853 - 13764915
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||| |||| || || ||||||||||||| |||||||||||| ||||||||    
T  13764853 taacaatgttgcacatcttttgaatctgtttaatatatatttttcaaatatttggcacccccg 13764915  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 25644852 - 25644914
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| ||||||||| ||  | ||||||||||||  |||||||||||| ||||||||    
T  25644852 taacaatgttgcacatattttgaatttgtttaatatatatgtttcaaatatttggcacccccg 25644914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 43410392 - 43410450
Alignment:
Q  17 acaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccc 75  Q
    ||||||||  |||| |||| ||| | |||||||||||||||| ||||||||||||||||    
T  43410392 acaatgtttcacattttttaaaattgtttaatatatattcttaaaatatttgacacccc 43410450  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 47100096 - 47100158
Alignment:
Q  15 taacaatgttgtacatatttttaaactatttaatatatattcttcaaatatttgacacccccg 77  Q
    ||||||||||| |||| |||| || || ||||||||||||| || ||||||||| ||||||||    
T  47100096 taacaatgttgcacatcttttgaatctgtttaatatatattttttaaatatttggcacccccg 47100158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 38233061 - 38233025
Alignment:
Q  32 tttttaaactatttaatatatattcttcaaatatttg 68  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  38233061 ttttttaactgtttaatatatattcttcaaatatttg 38233025  T

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