View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19531_low_4 (Length: 411)
Name: NF19531_low_4
Description: NF19531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19531_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 32534682 - 32534294
Alignment:
| Q |
6 |
agtgagatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgcaggacatgtctagaataacaagagctcattgacatgtgat |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
32534682 |
agtgatatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgtaggacatgtatagaataacaagaggtcattgacatgtgat |
32534583 |
T |
|
| Q |
106 |
gaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaaatacaaattctaaattatactactaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32534582 |
gaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaaatacaaattctaaattatactactaa |
32534483 |
T |
|
| Q |
206 |
agacatcattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattca |
305 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32534482 |
agacatcattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattca |
32534383 |
T |
|
| Q |
306 |
agcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctattttggagtgtctaggctgttagtcatgcccttatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32534382 |
agcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgttagtcatgcccttatt |
32534294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 32549995 - 32549959
Alignment:
| Q |
21 |
aactgagttttggtgacaaattgtatcaagctaggaa |
57 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32549995 |
aactgagttttggagacaaattgtatcaagctaggaa |
32549959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University