View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19532_high_1 (Length: 540)
Name: NF19532_high_1
Description: NF19532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19532_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 40924095 - 40924639
Alignment:
| Q |
1 |
atagagaaggatgtggatgagaatgtaagaagagatcaagagagtgcaatgaagatagaaatggatgaaaacaagtgaagcataaaacacaaacgcctgt |
100 |
Q |
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| T |
40924095 |
atagagaaggatgtgaatgagaatgtaagaagagatcaagagagtgcaatgaagatagaaatggatgaaaacaagtgaagcataaaacacaaacgccagt |
40924194 |
T |
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| Q |
101 |
gaatgaagtgaatctagtatggaaaatgagaattggtatcatactttgtaatcttcatctaagaaactaacaaatccttcacagttgttgtaggttacgt |
200 |
Q |
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| T |
40924195 |
gaatgaagcgaatctagtatggaaaatgagaattggtatcatactttgtgatcttcatctaagaaactaacaaatccttcacagttgttgtaggttacgt |
40924294 |
T |
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| Q |
201 |
tgaccaatgggcaatgacgatggcagagctgaggggccattgagaatgttcaaggctgaatgaaaaagagttagaagaagattgtcctatatagtatcga |
300 |
Q |
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| T |
40924295 |
tgac-------caatgaccatggcagagctgaggggccattgagaatgttcaaggctgaatgaaaaagagttagaagaagattgtcccatatagtatcga |
40924387 |
T |
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| Q |
301 |
tgtatc------------cttgttaactaacaccgagcatgctaatataaatttttgtcaatcaactcaaaatctaacatagatcc-------------- |
374 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924388 |
tgtatccctcaaatattacttgttaactaacaccgagcatgctaatataaatttttgtcaatcaactcaaaatctaacatagatccgcagtcacatattt |
40924487 |
T |
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| Q |
375 |
gcagtgtttaaaaaccggttaataacaatgattaaactaaatactaagtaattatcagaacttcaacaaaattaacagaaatattaactgaagtgtccta |
474 |
Q |
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| T |
40924488 |
gcagtgtttaagaaccagttaataacaatggttaaactaaatactaagtaattatcagaacttcaacaaaattaacagaaatattaactgaagtgtccta |
40924587 |
T |
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| Q |
475 |
tatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaac |
526 |
Q |
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| T |
40924588 |
tatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaac |
40924639 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 468
Target Start/End: Original strand, 34990691 - 34990727
Alignment:
| Q |
432 |
gaacttcaacaaaattaacagaaatattaactgaagt |
468 |
Q |
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| T |
34990691 |
gaacttcaacaaaattaacagaaatattaactgaagt |
34990727 |
T |
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