View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19532_high_5 (Length: 250)
Name: NF19532_high_5
Description: NF19532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19532_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42761973 - 42761731
Alignment:
| Q |
1 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761973 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
42761874 |
T |
|
| Q |
101 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761873 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
42761774 |
T |
|
| Q |
201 |
atttttaaatacgtccataacaccaagtaatttttctcctatg |
243 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
42761773 |
atttttaaatacgtcaataacacaaagtaatttttctcctatg |
42761731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42743146 - 42742908
Alignment:
| Q |
1 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
100 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| | |
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| T |
42743146 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgt |
42743047 |
T |
|
| Q |
101 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
200 |
Q |
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| T |
42743046 |
tggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtc |
42742947 |
T |
|
| Q |
201 |
atttttaaatacgtccataacaccaagtaatttttctcc |
239 |
Q |
| |
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||||| ||||| ||| || |||||||||||||||||||| |
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| T |
42742946 |
attttaaaatatgtcaattacaccaagtaatttttctcc |
42742908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42752505 - 42752267
Alignment:
| Q |
1 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
100 |
Q |
| |
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|||||||| | ||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| | |
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| T |
42752505 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgt |
42752406 |
T |
|
| Q |
101 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
200 |
Q |
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||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
42752405 |
tggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtc |
42752306 |
T |
|
| Q |
201 |
atttttaaatacgtccataacaccaagtaatttttctcc |
239 |
Q |
| |
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||||| ||||| ||| || |||||||||||||||||||| |
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| T |
42752305 |
attttaaaatatgtcaattacaccaagtaatttttctcc |
42752267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42735567 - 42735811
Alignment:
| Q |
1 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
100 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||||||||||||| |||||| | || || | |||| ||||| | ||||||||||| ||||||||||| |
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| T |
42735567 |
ctcttgatcctcataaggcacatggaaaaatattggtatgtcttgaaggtgaaaatagtaaacttgaaaagggcatagaagcttctcgagtaggtgctat |
42735666 |
T |
|
| Q |
101 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
200 |
Q |
| |
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||||||||| |||| || ||| | || ||||| || || |||||| ||| ||||| |||||||| |||||| |||||| ||| |||||| || |
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| T |
42735667 |
tggaatgatcttggttattgagagggagtcagggggagaagttatagctgatgctcacgtgcttccagcttcaaatgttaatgttaccgatggaagttac |
42735766 |
T |
|
| Q |
201 |
atttttaaatacgtccataacaccaagtaatttttctcctatgct |
245 |
Q |
| |
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|||||||| |||| | |||| |||||||||||||||||| ||||| |
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| T |
42735767 |
atttttaattacgccaataaaaccaagtaatttttctcccatgct |
42735811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 42768900 - 42768796
Alignment:
| Q |
15 |
aaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattttgg |
114 |
Q |
| |
|
||||| || ||||||||| | || ||||||||||| |||| | ||||| ||||||||||||| ||||| || | | ||||||| ||||||||||||||| |
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| T |
42768900 |
aaggctaaaggaaaaatagttgtttgtcttcgaggcgacaatgatagaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttgg |
42768801 |
T |
|
| Q |
115 |
ctaat |
119 |
Q |
| |
|
||||| |
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| T |
42768800 |
ctaat |
42768796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 42716486 - 42716436
Alignment:
| Q |
69 |
aagggtgtggaagcttctcgtgtaggtgctattggaatgattttggctaat |
119 |
Q |
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|
||||||||||||||| |||||||||||||| ||||||| |||||||||||| |
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| T |
42716486 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
42716436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 23041270 - 23041508
Alignment:
| Q |
1 |
ctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctat |
100 |
Q |
| |
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|||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| | |||||||| ||||||||||| ||||||||| | |
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| T |
23041270 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgt |
23041369 |
T |
|
| Q |
101 |
tggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagattta |
200 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
23041370 |
tggaatgattttggctaatgacgaggcttcaggcggtgaaattatatctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtc |
23041469 |
T |
|
| Q |
201 |
atttttaaatacgtccataacaccaagtaatttttctcc |
239 |
Q |
| |
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||||| ||||| ||| || |||||||||||||||||||| |
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|
| T |
23041470 |
attttaaaatatgtcaattacaccaagtaatttttctcc |
23041508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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