View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19532_low_2 (Length: 412)
Name: NF19532_low_2
Description: NF19532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19532_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 395
Target Start/End: Original strand, 33749648 - 33750015
Alignment:
| Q |
26 |
gagagtagcaagaacaagaagacaagaagatcccaccaacgaatgatcacctgaaggtaaatggtcaaatcagaagtgaaatatcaaaacacactcttta |
125 |
Q |
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| T |
33749648 |
gagagtagcaagaacaagaagacaagaagatcccaccaacgaatgatcacctgaagggaaatggtcaaatcagaagtgaaatatcaaaacacactcttta |
33749747 |
T |
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| Q |
126 |
caccg------agagtgagagtgaactctaaatctaatttcattttcgttccccacctcttatgtggcgctttctccttaaccctcatatttgcaccctc |
219 |
Q |
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| T |
33749748 |
cactgtcactgatagtgagagtgaactctaaatctaatttcattttcgttccccacctcttatgtggcgctttctccttaaccctcatatttgcaccctc |
33749847 |
T |
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| Q |
220 |
aagtctatat--gaagt-----gacatttctcactctctactatatgacccaccacgagacacaaaatgcacacatccaaatcctatgtgg-cactaata |
311 |
Q |
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|| ||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33749848 |
aaatctatatatgaagttgacagacatttctcactctctactat--gacccaccacaagacacaaaatgcacacatccaaatcctatgtggccactaata |
33749945 |
T |
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| Q |
312 |
cataactccacgtgatccataaatccaagtttttaccctttcaaagatcaaaagtgaaccgtgtgggatcggtgtgcacagctg |
395 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33749946 |
cata--------------ataaatccaagtttttaccctttcaaagatcaaaagtgaaccgtgtgggatcggtgtgcacagctg |
33750015 |
T |
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