View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19532_low_3 (Length: 363)
Name: NF19532_low_3
Description: NF19532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19532_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 45 - 363
Target Start/End: Complemental strand, 4702543 - 4702225
Alignment:
| Q |
45 |
aaataaatcagtctaaaatacttaattataaacacataatggaggttaatttcaaaaatccaaatacaagcagagtaacataaacactcaccatctacta |
144 |
Q |
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| T |
4702543 |
aaataaatcagtctaaaatacttaattataaacacataatggaggttaatttcaaaaatccaaatacaagcagagtaccataaacactcaccatctacta |
4702444 |
T |
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| Q |
145 |
gaagaacgtctccaacctcgacatcgttaacaaaatcatcataattgacactaacagtatcttgagtgctaacccccctgttaatggtaaaattgaatgt |
244 |
Q |
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| T |
4702443 |
gaagaacgtctccaacctcgacatcattaacaaaatcatcataattgacactaacagtatcttgagtgctaacccccctgttaatggtaaaattgaatgt |
4702344 |
T |
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| Q |
245 |
ttgcccctctttgagtaaaattggttgtgacacatccccacttctaacttcaggaccctgcaaataaaaattagttaataccacgcaatacctggcatgt |
344 |
Q |
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| T |
4702343 |
ttgcccctctttgagtaaaattggttgtgacacatccccacttctaacttcaggaccctgcaaataaaaattagttaataccacgcaatacctagcatgt |
4702244 |
T |
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| Q |
345 |
tacataaatacatttaact |
363 |
Q |
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||||| ||||||||||||| |
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| T |
4702243 |
tacatcaatacatttaact |
4702225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4702680 - 4702633
Alignment:
| Q |
1 |
tcaaagtcttcttaaattacatttaaaagaagaaatgttctctaaaat |
48 |
Q |
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| T |
4702680 |
tcaaagtcttcttaaattacatttaaaagaagaaatgttctctaaaat |
4702633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 11593526 - 11593478
Alignment:
| Q |
264 |
attggttgtgacacatccccacttctaacttcaggaccctgcaaataaa |
312 |
Q |
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| T |
11593526 |
attggttgtggcaaatccccacttctaacttcaggaccctacaattaaa |
11593478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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