View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19533_high_1 (Length: 670)

Name: NF19533_high_1
Description: NF19533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19533_high_1
NF19533_high_1
[»] chr3 (3 HSPs)
chr3 (335-661)||(47292597-47292922)
chr3 (1-290)||(47292264-47292553)
chr3 (417-657)||(47293058-47293306)
[»] chr8 (1 HSPs)
chr8 (7-138)||(10389458-10389589)
[»] chr5 (1 HSPs)
chr5 (79-147)||(5803258-5803326)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 335 - 661
Target Start/End: Original strand, 47292597 - 47292922
Alignment:
Q  335 acaactcaatgacttaagtgattaggaaaggaaaataaatttttcgtatgttttattttctctgcagatagattaactagcagaatgattttaatctgaa 434  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292597 acaactcaatgactta-gtgattaggaaaggaaaataaatttttcgtatgttttattttctctgcagatagattaactagcagaatgattttaatctgaa 47292695  T
Q  435 aatcaaatattaatatttttaagatgcttattggcgcttcaatcaacaatctatgcttgttttctgggtgaaatggaaatagaaccgtattaatatttaa 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292696 aatcaaatattaatatttttaagatgcttattggcgcttcaatcaacaatctatgcttgttttctgggtgaaatggaaatagaaccgtattaatatttaa 47292795  T
Q  535 aagaccgtgtcaggcttgatatttgcttgtatctacttctatccttgtcttattttactgaagtatggatttagttctgatactgattttgaatctgata 634  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292796 aagaccgtgtcaggcttgatatttgcttgtatctgcttctatccttgtcttattttactgaagtatggatttagttctgatactgattttgaatctgata 47292895  T
Q  635 atcaaatacaaagtcacttaagaataa 661  Q
    |||||||||||||||||||||||||||    
T  47292896 atcaaatacaaagtcacttaagaataa 47292922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 47292264 - 47292553
Alignment:
Q  1 ttgagagcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292264 ttgagagcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaat 47292363  T
Q  101 ggctcaatgtgcttcagtccatacaaattccctttgcattgattcccctcctcacattagtctccaaagagcgtatcatggggtcctttaaggttgggcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292364 ggctcaatgtgcttcagtccatacaaattccctttgcattgattcccctcctcacattagtctccaaagagcgtatcatggggtcctttaaggttgggcc 47292463  T
Q  201 tgttcttgaggtgagttgatcatgatgtctcttcatttccgtaactgttaattgttagatctctgaactctaaagcaacttatgtcatgg 290  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47292464 tgttcttgaggtgagttgatcatgatgtttcttcatttccgtaactgttaattgttagatctctgaactctaaagcaacttatgccatgg 47292553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 417 - 657
Target Start/End: Original strand, 47293058 - 47293306
Alignment:
Q  417 gaatgattttaatctgaaaatcaaatattaatat-ttttaagatgcttattggcgcttcaatcaacaatctatgcttgttttctgggtgaaatggaaata 515  Q
    ||||||||||||||||| |||||||||| ||  | ||||||||||| ||||     |||||| | ||||||||||||||||||| ||| |||||||||||    
T  47293058 gaatgattttaatctgataatcaaatatcaagttattttaagatgcatattcaatattcaatta-caatctatgcttgttttctaggtaaaatggaaata 47293156  T
Q  516 gaaccgtattaat-atttaaaagaccgtgtcaggcttgatatttgcttgtatctacttctatccttgtcttattttactgaagt----atggatttagt- 609  Q
    ||||||||  |||  |||||||||| | |||| ||||||||||||  ||||| | |||||||||||||||| || |||| ||||    ||| |||||||     
T  47293157 gaaccgtagcaatgttttaaaagactgcgtcaagcttgatatttgtctgtatatgcttctatccttgtcttgttctactcaagtttagatgcatttagtt 47293256  T
Q  610 --tctgatactgattttgaatctgataatcaaatacaaagtcacttaaga 657  Q
      ||| ||||||||||||| || |||||| |||||| |||||||||||||    
T  47293257 catctaatactgattttgagtccgataataaaataccaagtcacttaaga 47293306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 10389458 - 10389589
Alignment:
Q  7 gcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaatggctca 106  Q
    |||||||||||| | |||||||| ||||| |||||||| |||||||| ||||||| ||| |  |||||||  |||||||||  ||||||||||||||| |    
T  10389458 gcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaaggttcattggatactttgaatgaatggctta 10389557  T
Q  107 atgtgcttcagtccatacaaattccctttgca 138  Q
    ||||||||||  | ||||||||||| ||||||    
T  10389558 atgtgcttcaagcaatacaaattccttttgca 10389589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 5803326 - 5803258
Alignment:
Q  79 tcattggatgttttgaatgaatggctcaatgtgcttcagtccatacaaattccctttgcattgattccc 147  Q
    ||||| |||||||||||||||||||| ||||| ||||||||  | ||||| || || ||||||||||||    
T  5803326 tcattagatgttttgaatgaatggcttaatgttcttcagtcagtgcaaatccctttcgcattgattccc 5803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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